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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
11101-11150 / 86044 show all
hfeng-pmm3SNPtvmap_l150_m0_e0homalt
99.4741
99.6988
99.2504
78.1634
132441324103
30.0000
cchapple-customSNPtiHG002complexvarhet
99.7945
99.6988
99.8903
17.3501
313818948313318344249
72.3837
jmaeng-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.4801
99.6983
99.2628
67.4240
17515531750513011
8.4615
ltrigg-rtg2SNPtisegdup*
99.2028
99.6980
98.7126
86.7471
19478591947525432
12.5984
jmaeng-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.5601
99.6979
99.4226
63.8015
353121073530120516
7.8049
eyeh-varpipeSNPtvmap_l150_m1_e0het
96.1715
99.6977
92.8862
79.2854
692521685552511
2.0952
hfeng-pmm1INDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.6018
99.6976
99.5062
56.7205
36271136271818
100.0000
hfeng-pmm3SNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.8394
99.6976
99.9816
59.7625
10878331087521
50.0000
jmaeng-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.6389
99.6975
99.5803
59.3397
177975417796755
6.6667
jli-customSNPtvsegduphet
99.3872
99.6974
99.0789
90.9422
5271165271490
0.0000
hfeng-pmm3SNPtvsegduphet
99.6218
99.6974
99.5464
90.8847
5271165267240
0.0000
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.5467
99.6973
99.3965
52.0107
4282134282261
3.8462
egarrison-hhgaSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.7960
99.6973
99.8950
55.4424
1712552171261814
77.7778
dgrover-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50*
99.7011
99.6968
99.7054
51.0387
1183936118443516
45.7143
gduggal-bwafbSNP*lowcmp_SimpleRepeat_triTR_11to50het
99.2360
99.6967
98.7794
42.1600
4602144613579
15.7895
cchapple-customSNP*lowcmp_SimpleRepeat_triTR_11to50het
99.5568
99.6967
99.4174
37.3360
4602144607278
29.6296
ckim-dragenSNP*HG002compoundhethet
99.7322
99.6967
99.7677
46.4046
141354314173338
24.2424
dgrover-gatkINDELD1_5HG002complexvarhet
99.8048
99.6966
99.9132
56.2931
2070263207101811
61.1111
ckim-vqsrINDELD1_5*het
99.6940
99.6963
99.6917
60.8657
8730826687313270118
43.7037
dgrover-gatkINDELI1_5HG002compoundhethomalt
73.8739
99.6960
58.6762
88.9153
3281328231231
100.0000
ckim-vqsrINDELI1_5HG002compoundhethomalt
73.9572
99.6960
58.7814
88.6470
3281328230230
100.0000
ckim-gatkINDELI1_5HG002compoundhethomalt
73.8739
99.6960
58.6762
88.6290
3281328231231
100.0000
jli-customINDELI1_5HG002compoundhethomalt
83.7803
99.6960
72.2467
88.6301
3281328126125
99.2063
bgallagher-sentieonINDELI1_5HG002compoundhethomalt
66.5990
99.6960
50.0000
87.6390
3281328328328
100.0000
astatham-gatkINDELI1_5HG002compoundhethomalt
72.9700
99.6960
57.5439
88.3697
3281328242242
100.0000
gduggal-bwafbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
97.9766
99.6958
96.3156
68.1284
2950929541135
4.4248
hfeng-pmm3SNP*map_siren*
99.7673
99.6957
99.8390
54.1028
14578344514576023540
17.0213
jlack-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.6198
99.6956
99.5441
80.5441
655265531
33.3333
gduggal-bwavardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
93.0462
99.6956
87.2283
80.4151
65526429457
60.6383
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.4948
99.6956
99.2948
79.7023
655270453
60.0000
rpoplin-dv42INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.6198
99.6956
99.5441
79.9635
655265533
100.0000
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8131
99.6954
99.9311
54.3062
10147311014877
100.0000
ckim-dragenSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.8472
99.6949
100.0000
33.7893
13074130700
egarrison-hhgaSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.8472
99.6949
100.0000
35.4886
13074130700
eyeh-varpipeSNP*map_l125_m2_e1*
98.7976
99.6949
97.9163
74.9861
470581444567697238
3.9095
gduggal-bwafbINDELI1_5map_l125_m1_e0homalt
99.3902
99.6942
99.0881
84.2433
326132631
33.3333
ckim-gatkINDELI1_5map_l125_m1_e0homalt
99.3902
99.6942
99.0881
83.8329
326132632
66.6667
ckim-vqsrINDELI1_5map_l125_m1_e0homalt
99.5420
99.6942
99.3902
83.8741
326132621
50.0000
dgrover-gatkINDELI1_5map_l125_m1_e0homalt
99.3902
99.6942
99.0881
83.5088
326132632
66.6667
ndellapenna-hhgaINDELI1_5map_l125_m1_e0homalt
99.3902
99.6942
99.0881
83.4507
326132631
33.3333
eyeh-varpipeSNP*map_l125_m2_e0*
98.7944
99.6939
97.9109
74.9243
465801434522796538
3.9378
hfeng-pmm1SNP*segduphet
99.6248
99.6939
99.5558
89.5848
172645317258770
0.0000
hfeng-pmm1INDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.4871
99.6937
97.3094
71.3122
65126511817
94.4444
cchapple-customINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.1825
99.6937
96.7164
71.0458
65126482221
95.4545
ckim-dragenINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.3094
99.6937
95.0365
73.7548
65126513434
100.0000
jpowers-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
94.4849
99.6935
89.7936
83.3014
3903123915445231
51.9101
jli-customSNP*lowcmp_SimpleRepeat_homopolymer_6to10het
99.8148
99.6933
99.9367
55.5774
11050341104874
57.1429
cchapple-customSNPtiHG002complexvar*
99.8096
99.6932
99.9263
17.3694
5068761560505502373274
73.4584
ghariani-varprowlSNPtisegdup*
98.2251
99.6929
96.7998
91.5895
19477601948064438
5.9006
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_triTR_11to50*
99.7441
99.6928
99.7955
25.9231
389412390481
12.5000