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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 218 219 220 221 222 223 224 225 226 ... 1720 1721 » 11051-11100 / 86044 show all
eyeh-varpipe	SNP	tv	map_l150_m1_e0	*	97.4561	99.7067	95.3048	77.8264	10880	32	10819	533	14	2.6266
ckim-vqsr	INDEL	I1_5	map_l125_m2_e0	homalt	99.5608	99.7067	99.4152	85.0850	340	1	340	2	1	50.0000
dgrover-gatk	INDEL	I1_5	map_l125_m2_e0	homalt	99.4152	99.7067	99.1254	84.7216	340	1	340	3	2	66.6667
ckim-gatk	INDEL	I1_5	map_l125_m2_e0	homalt	99.4152	99.7067	99.1254	85.0480	340	1	340	3	2	66.6667
qzeng-custom	SNP	tv	func_cds	homalt	99.8531	99.7066	100.0000	25.3758	1699	5	1688	0	0
eyeh-varpipe	SNP	*	map_l150_m0_e0	homalt	99.7393	99.7065	99.7720	78.7376	4077	12	3939	9	4	44.4444
hfeng-pmm1	SNP	*	map_l150_m0_e0	homalt	99.5848	99.7065	99.4633	76.6851	4077	12	4077	22	7	31.8182
hfeng-pmm2	SNP	*	map_l150_m0_e0	homalt	99.5726	99.7065	99.4390	76.7349	4077	12	4077	23	8	34.7826
ghariani-varprowl	SNP	*	HG002complexvar	*	99.3539	99.7064	99.0038	22.0629	752159	2215	752549	7572	1579	20.8531
eyeh-varpipe	SNP	*	map_l250_m2_e1	homalt	99.7772	99.7057	99.8489	89.2201	2710	8	2643	4	4	100.0000
gduggal-snapfb	SNP	ti	HG002complexvar	homalt	99.6542	99.7054	99.6030	19.3776	192894	570	192940	769	240	31.2094
hfeng-pmm1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.5170	99.7054	99.3293	39.8437	4739	14	4739	32	32	100.0000
raldana-dualsentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.8260	99.7054	99.9469	65.8244	16925	50	16925	9	8	88.8889
raldana-dualsentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.8260	99.7054	99.9469	65.8244	16925	50	16925	9	8	88.8889
rpoplin-dv42	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.7694	99.7050	99.8338	75.7174	5407	16	5407	9	2	22.2222
rpoplin-dv42	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.7694	99.7050	99.8338	75.7174	5407	16	5407	9	2	22.2222
dgrover-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.8338	99.7050	99.9630	71.6940	5407	16	5407	2	2	100.0000
dgrover-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.8338	99.7050	99.9630	71.6940	5407	16	5407	2	2	100.0000
jli-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.8246	99.7050	99.9445	72.0298	5407	16	5407	3	2	66.6667
jli-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.8246	99.7050	99.9445	72.0298	5407	16	5407	3	2	66.6667
raldana-dualsentieon	SNP	ti	map_l100_m1_e0	homalt	99.8161	99.7049	99.9275	56.2318	17907	53	17907	13	12	92.3077
ndellapenna-hhga	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8276	99.7048	99.9507	44.3071	4053	12	4053	2	2	100.0000
egarrison-hhga	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8153	99.7048	99.9260	44.7261	4053	12	4053	3	2	66.6667
ckim-vqsr	INDEL	D16_PLUS	*	homalt	99.0314	99.7045	98.3673	70.9863	1687	5	1687	28	22	78.5714
ckim-gatk	INDEL	D16_PLUS	*	homalt	99.0314	99.7045	98.3673	70.9863	1687	5	1687	28	22	78.5714
astatham-gatk	INDEL	D16_PLUS	*	homalt	99.1187	99.7045	98.5397	70.8497	1687	5	1687	25	20	80.0000
ndellapenna-hhga	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7617	99.7043	99.8191	54.9748	6070	18	6071	11	9	81.8182
hfeng-pmm2	SNP	tv	HG002complexvar	*	99.8387	99.7038	99.9739	21.6976	245423	729	245339	64	21	32.8125
egarrison-hhga	SNP	*	map_l125_m2_e1	homalt	99.8144	99.7034	99.9257	69.0000	17480	52	17480	13	13	100.0000
raldana-dualsentieon	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8251	99.7031	99.9475	55.2981	17126	51	17123	9	6	66.6667
eyeh-varpipe	SNP	*	map_l250_m2_e0	homalt	99.7746	99.7022	99.8472	89.1514	2678	8	2613	4	4	100.0000
jlack-gatk	SNP	*	HG002compoundhet	*	99.5417	99.7018	99.3822	42.1778	25745	77	25738	160	46	28.7500
jmaeng-gatk	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.5812	99.7018	99.4609	42.3318	10700	32	10700	58	2	3.4483
gduggal-bwafb	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.4445	99.7009	99.1894	39.5064	7333	22	7342	60	10	16.6667
ltrigg-rtg1	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8004	99.7008	99.9001	56.9199	6998	21	7003	7	4	57.1429
gduggal-snapfb	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.1501	99.7008	98.6054	62.2072	6998	21	7000	99	15	15.1515
rpoplin-dv42	SNP	ti	segdup	het	99.7339	99.7007	99.7671	89.8249	11994	36	11992	28	3	10.7143
hfeng-pmm3	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.5421	99.7007	99.3840	44.2028	10326	31	10326	64	61	95.3125
hfeng-pmm1	SNP	ti	segdup	het	99.6179	99.7007	99.5352	89.0346	11994	36	11992	56	0	0.0000
egarrison-hhga	SNP	*	map_l125_m2_e0	homalt	99.8127	99.7007	99.9250	68.9614	17323	52	17323	13	13	100.0000
cchapple-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.7005	99.7006	99.7004	54.6843	1332	4	1331	4	0	0.0000
egarrison-hhga	SNP	*	HG002complexvar	*	99.8252	99.7002	99.9506	18.9844	752119	2262	752170	372	223	59.9462
cchapple-custom	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7813	99.6999	99.8628	43.7307	3655	11	3639	5	5	100.0000
jmaeng-gatk	INDEL	D1_5	*	het	99.4941	99.6997	99.2893	60.9724	87311	263	87316	625	129	20.6400
hfeng-pmm2	SNP	tv	map_siren	*	99.6626	99.6995	99.6257	59.0414	45792	138	45784	172	23	13.3721
ckim-dragen	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.7127	99.6993	99.7261	53.8549	3647	11	3641	10	3	30.0000
ltrigg-rtg2	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8494	99.6992	100.0000	33.0461	1326	4	1321	0	0
bgallagher-sentieon	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.6226	99.6991	99.5463	74.7408	33136	100	33130	151	120	79.4702
asubramanian-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7217	99.6990	99.7443	56.4874	11262	34	11313	29	10	34.4828
egarrison-hhga	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.6460	99.6990	99.5931	55.9882	11262	34	11258	46	37	80.4348

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