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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
11001-11050 / 86044 show all
bgallagher-sentieonINDELD1_5HG002complexvarhet
99.8096
99.7111
99.9084
56.0707
2070560207131912
63.1579
rpoplin-dv42SNP*lowcmp_SimpleRepeat_diTR_11to50*
99.7162
99.7111
99.7214
67.6049
96642896642720
74.0741
qzeng-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.4570
99.7110
99.2042
74.6128
345137431
33.3333
ckim-dragenINDELD1_5segduphet
96.2915
99.7110
93.0988
95.7597
6902688510
0.0000
cchapple-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.8553
99.7110
100.0000
75.3957
345134200
dgrover-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
99.7975
99.7110
99.8843
36.2126
17255172622
100.0000
egarrison-hhgaINDELD1_5segduphet
98.1532
99.7110
96.6434
93.9982
69026912421
87.5000
asubramanian-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.7114
99.7110
99.7118
79.0838
345134611
100.0000
ciseli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
94.3610
99.7108
89.5561
64.7005
13794137216026
16.2500
jmaeng-gatkSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
99.8406
99.7106
99.9710
62.7500
344510344511
100.0000
jli-customSNPtilowcmp_SimpleRepeat_diTR_11to50*
99.7828
99.7106
99.8551
69.0939
482314482374
57.1429
hfeng-pmm2SNPtimap_l125_m0_e0homalt
99.6883
99.7105
99.6661
69.9826
4478134478156
40.0000
raldana-dualsentieonSNPtimap_l100_m2_e0homalt
99.8196
99.7105
99.9288
58.8267
1825653182561312
92.3077
hfeng-pmm3SNPtvmap_siren*
99.7604
99.7104
99.8104
56.7354
45797133457898715
17.2414
eyeh-varpipeSNPtvmap_l150_m2_e0het
96.2702
99.7104
93.0595
80.3258
723121716053411
2.0599
ckim-dragenINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
97.8109
99.7103
95.9825
45.9159
103273010321432429
99.3056
egarrison-hhgaSNPtimap_l125_m1_e0homalt
99.8187
99.7103
99.9274
66.0474
11013321101388
100.0000
jli-customSNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.6524
99.7101
99.5947
36.6587
3440103440142
14.2857
ltrigg-rtg1SNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.6813
99.7101
99.6525
34.1910
3440103441123
25.0000
mlin-fermikitSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
98.1641
99.7099
96.6655
41.7144
2750827549583
87.3684
jlack-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
99.7099
99.7098
99.7099
59.0011
2817882281818231
37.8049
jli-customSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.2041
99.7097
98.7036
65.3598
17517511751223014
6.0870
ltrigg-rtg2SNPtvmap_l100_m2_e1homalt
99.8278
99.7097
99.9461
61.3020
927527927453
60.0000
hfeng-pmm1SNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.8455
99.7089
99.9825
55.0685
17127501712432
66.6667
eyeh-varpipeSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
96.8074
99.7089
94.0700
62.9542
616618591737314
3.7534
gduggal-bwafbSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.6944
99.7089
99.6800
57.2704
1712750171305530
54.5455
jli-customINDELD1_5*het
99.7840
99.7088
99.8593
56.7542
873192558731312365
52.8455
hfeng-pmm1SNPtvHG002complexvar*
99.8458
99.7087
99.9833
21.6860
2454357172453494120
48.7805
jli-customINDEL*HG002compoundhethomalt
72.9600
99.7085
57.5273
84.4270
6842684505502
99.4059
gduggal-bwafbINDELI1_5map_l125_m2_e1homalt
99.1304
99.7085
98.5591
85.6966
342134251
20.0000
dgrover-gatkINDELI1_5map_l125_m2_e1homalt
99.4186
99.7085
99.1304
84.9608
342134232
66.6667
ckim-vqsrINDEL*HG002compoundhethomalt
61.0714
99.7085
44.0154
84.7468
6842684870867
99.6552
ckim-vqsrINDELI1_5map_l125_m2_e1homalt
99.5633
99.7085
99.4186
85.2740
342134221
50.0000
dgrover-gatkINDEL*HG002compoundhethomalt
61.4004
99.7085
44.3580
85.1072
6842684858856
99.7669
bgallagher-sentieonINDEL*HG002compoundhethomalt
53.1056
99.7085
36.1905
83.1205
684268412061203
99.7512
astatham-gatkINDEL*HG002compoundhethomalt
60.8541
99.7085
43.7900
84.6320
6842684878876
99.7722
ltrigg-rtg1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.8540
99.7085
100.0000
50.1462
342134100
ckim-dragenSNPtvlowcmp_SimpleRepeat_diTR_11to50het
99.7412
99.7085
99.7738
68.8882
30799308876
85.7143
ckim-gatkINDEL*HG002compoundhethomalt
61.0169
99.7085
43.9589
84.7301
6842684872869
99.6560
ckim-gatkINDELI1_5map_l125_m2_e1homalt
99.4186
99.7085
99.1304
85.2375
342134232
66.6667
bgallagher-sentieonSNPtvmap_siren*
99.5565
99.7083
99.4051
58.5993
457961344578827436
13.1387
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.6574
99.7082
97.6284
65.7023
181135318113440428
97.2727
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.6574
99.7082
97.6284
65.7023
181135318113440428
97.2727
ckim-vqsrSNP*func_cds*
99.7574
99.7080
99.8069
31.6969
180975318094350
0.0000
gduggal-bwafbSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.7989
99.7078
99.8902
34.3036
27308272831
33.3333
rpoplin-dv42INDELD1_5*het
99.5696
99.7077
99.4320
57.4420
8731825687348499434
86.9739
hfeng-pmm1SNP*map_l100_m0_e0homalt
99.7374
99.7074
99.7675
63.8562
1158634115862710
37.0370
ndellapenna-hhgaSNPtimap_sirenhomalt
99.8244
99.7072
99.9418
51.3860
37805111378062220
90.9091
ltrigg-rtg2SNPtvmap_l100_m2_e0homalt
99.8261
99.7070
99.9456
61.2864
918727918653
60.0000
gduggal-bwafbINDELI1_5map_l125_m2_e0homalt
99.4152
99.7067
99.1254
85.4907
340134031
33.3333