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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
10951-11000 / 86044 show all
eyeh-varpipeSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
95.9908
99.7206
92.5300
66.9362
42831241623369
2.6786
mlin-fermikitSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
98.3774
99.7197
97.0708
30.6893
1423414254341
95.3488
cchapple-customSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.8596
99.7197
100.0000
23.7942
14234142200
jmaeng-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.7896
99.7197
99.8596
27.8116
14234142322
100.0000
ltrigg-rtg1SNPtvlowcmp_SimpleRepeat_triTR_11to50het
99.6037
99.7194
99.4884
35.8783
213262139112
18.1818
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.7705
99.7193
97.8396
67.4095
181155118115400388
97.0000
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.7705
99.7193
97.8396
67.4095
181155118115400388
97.0000
hfeng-pmm3SNPtiHG002complexvarhet
99.8511
99.7192
99.9834
16.8098
3138828843138325210
19.2308
cchapple-customSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.7439
99.7184
99.7695
31.0247
389511389593
33.3333
ltrigg-rtg1SNPtilowcmp_SimpleRepeat_triTR_11to50*
99.7697
99.7184
99.8211
26.0771
389511390571
14.2857
ltrigg-rtg1INDELI1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.6234
99.7183
99.5287
62.3224
10623105653
60.0000
hfeng-pmm2INDELI1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.4848
99.7183
99.2523
67.2382
10623106288
100.0000
egarrison-hhgaSNPtimap_l125_m2_e0homalt
99.8237
99.7183
99.9294
68.6664
11326321132688
100.0000
eyeh-varpipeSNPtvmap_l150_m2_e0*
97.5167
99.7182
95.4103
79.1143
11323321126754214
2.5830
eyeh-varpipeSNPtimap_l100_m2_e0*
99.3504
99.7181
98.9854
68.9913
488231384790349132
6.5173
astatham-gatkSNPtifunc_cdshet
99.8234
99.7178
99.9293
24.2094
848024847860
0.0000
jlack-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50het
99.4965
99.7175
99.2765
38.0786
247172470181
5.5556
jmaeng-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.7157
99.7174
99.7139
56.2929
2788079278798010
12.5000
ltrigg-rtg2SNPtvHG002complexvarhet
99.8062
99.7174
99.8951
21.1944
15030842615052315848
30.3797
jlack-gatkINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.9618
99.7173
98.2178
72.3769
35271035276463
98.4375
ckim-vqsrINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
99.7468
99.7171
99.7766
54.5091
6697196699158
53.3333
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
99.7691
99.7171
99.8211
53.8271
6697196696127
58.3333
hfeng-pmm1SNPtimap_l100_m0_e0homalt
99.7619
99.7170
99.8069
63.0178
7752227752156
40.0000
jlack-gatkSNPtvsegduphet
96.4748
99.7163
93.4374
95.6607
52721552683700
0.0000
eyeh-varpipeSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
97.2808
99.7163
94.9614
65.1121
38671136941968
4.0816
eyeh-varpipeSNPtimap_l100_m1_e0*
99.3616
99.7163
99.0095
67.2794
477951364688346932
6.8230
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.6069
99.7147
97.5235
50.6371
2796827967171
100.0000
cchapple-customSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.3227
99.7146
98.9339
60.9851
27599792765529824
8.0537
eyeh-varpipeSNPtvmap_l150_m2_e1het
96.3036
99.7142
93.1185
80.3759
732721725353611
2.0522
eyeh-varpipeSNPtvmap_l100_m0_e0homalt
99.7129
99.7140
99.7118
68.3997
3835113806113
27.2727
ltrigg-rtg1SNPtvmap_l100_m0_e0homalt
99.7918
99.7140
99.8697
63.2094
383511383352
40.0000
rpoplin-dv42SNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.7997
99.7140
99.8855
65.5220
17435174521
50.0000
ckim-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.2011
99.7140
98.6934
41.6778
1813152181282403
1.2500
raldana-dualsentieonSNPtvHG002complexvar*
99.8458
99.7136
99.9784
21.7224
2454477052453625318
33.9623
ndellapenna-hhgaSNP*map_sirenhomalt
99.8258
99.7135
99.9382
52.6378
54998158549993430
88.2353
raldana-dualsentieonSNPtimap_l100_m2_e1homalt
99.8214
99.7134
99.9296
58.8080
1844153184411312
92.3077
astatham-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
99.8087
99.7134
99.9043
58.1701
2817981281812715
55.5556
gduggal-bwafbSNPtvHG002complexvarhet
99.7366
99.7134
99.7598
23.4830
150302432150365362122
33.7017
egarrison-hhgaSNPtisegdup*
99.6343
99.7134
99.5554
88.9440
1948156194818725
28.7356
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.8244
99.7128
99.9361
40.9541
625018625943
75.0000
ghariani-varprowlSNPtilowcmp_SimpleRepeat_homopolymer_6to10*
98.8700
99.7128
98.0414
48.3490
625018625712513
10.4000
ltrigg-rtg2SNPtvmap_l100_m1_e0homalt
99.8284
99.7125
99.9446
58.6136
901726901653
60.0000
qzeng-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
98.3855
99.7116
97.0943
71.3328
138341370411
2.4390
ltrigg-rtg1SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
98.3663
99.7116
97.0568
64.7187
138341418431
2.3256
raldana-dualsentieonINDELI6_15*homalt
97.3324
99.7115
95.0642
52.3622
6221186221323318
98.4520
ckim-dragenINDELI6_15*homalt
96.6294
99.7115
93.7321
54.6498
6221186221416414
99.5192
gduggal-snapfbSNP*segduphomalt
99.6002
99.7114
99.4891
90.4625
1071231107115517
30.9091
jmaeng-gatkSNP*lowcmp_SimpleRepeat_diTR_11to50het
99.7273
99.7114
99.7433
70.7941
62181862181611
68.7500
jmaeng-gatkSNP*lowcmp_SimpleRepeat_diTR_11to50*
99.7677
99.7111
99.8244
68.3834
96642896641712
70.5882
ckim-gatkINDELD1_5HG002complexvarhet
99.7759
99.7111
99.8409
56.3066
2070560207103315
45.4545