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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
10801-10850 / 86044 show all
gduggal-bwafbSNPtiHG002complexvarhet
99.7807
99.7408
99.8207
18.4948
313950816314019564202
35.8156
eyeh-varpipeSNPtvmap_l100_m1_e0het
95.9704
99.7405
92.4749
70.7958
153774015189123616
1.2945
eyeh-varpipeSNP*map_l100_m2_e1*
98.6948
99.7404
97.6710
69.5344
7454319472256172351
2.9600
ltrigg-rtg1SNPtiHG002complexvar*
99.8532
99.7400
99.9667
17.5108
507114132250703416980
47.3373
jmaeng-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50het
99.6967
99.7400
99.6534
39.6128
4604124600162
12.5000
ltrigg-rtg1SNP*HG002complexvar*
99.8490
99.7395
99.9587
18.9301
7524191965752595311136
43.7299
jpowers-varprowlSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
94.4249
99.7395
89.6480
70.2838
344693464400231
57.7500
ghariani-varprowlSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
94.6830
99.7395
90.1145
68.5511
344693464380233
61.3158
raldana-dualsentieonSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
99.8406
99.7395
99.9420
62.2220
34469344622
100.0000
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
99.6837
99.7394
99.6281
54.8750
267972679102
20.0000
ltrigg-rtg2SNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.6381
99.7391
99.5373
34.1584
344193442163
18.7500
ckim-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.4564
99.7391
99.1754
42.0292
107042810704892
2.2472
dgrover-gatkSNP*HG002compoundhethet
99.7355
99.7390
99.7320
46.0622
1414137141393824
63.1579
ltrigg-rtg1SNPtvHG002complexvar*
99.8396
99.7384
99.9410
21.7226
24551164424576814559
40.6897
jlack-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
99.6624
99.7383
99.5867
60.0529
1638643163856818
26.4706
hfeng-pmm3SNP*map_l150_m2_e1homalt
99.7548
99.7379
99.7716
73.4338
1179631117962710
37.0370
hfeng-pmm3INDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
99.6691
99.7378
99.6004
35.1764
72281972282928
96.5517
cchapple-customINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
99.1720
99.7378
98.6126
26.3903
722819717910198
97.0297
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
98.5338
99.7378
97.3585
36.6570
7228197224196195
99.4898
eyeh-varpipeSNP*map_l100_m2_e0*
98.6905
99.7377
97.6651
69.5065
7377019471526171051
2.9825
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.0536
99.7374
96.4257
55.6216
9496259496352346
98.2955
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_triTR_11to50het
99.8248
99.7374
99.9124
46.8961
22796228220
0.0000
jlack-gatkINDELD1_5lowcmp_SimpleRepeat_triTR_11to50het
99.7594
99.7374
99.7814
47.4494
22796228250
0.0000
hfeng-pmm3SNPtvmap_l125_m2_e1homalt
99.7612
99.7366
99.7859
69.7479
6058166058135
38.4615
hfeng-pmm3INDEL*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.7447
99.7365
99.7529
55.2418
60561660561515
100.0000
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
91.2836
99.7361
84.1518
60.0000
37813777171
100.0000
jmaeng-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.8103
99.7360
99.8847
56.3092
147313914733174
23.5294
cchapple-customSNPtvsegduphet
99.3783
99.7352
99.0240
94.2756
5273145276520
0.0000
hfeng-pmm3SNP*map_l150_m2_e0homalt
99.7521
99.7350
99.7691
73.4090
1166831116682710
37.0370
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7085
99.7349
99.6820
71.4048
18815188163
50.0000
eyeh-varpipeSNP*map_l100_m1_e0*
98.6894
99.7348
97.6657
67.8112
7221119269996167351
3.0484
hfeng-pmm2SNP*segduphet
99.5302
99.7344
99.3269
90.9417
1727146172651170
0.0000
hfeng-pmm3SNP*segduphet
99.5790
99.7344
99.4241
89.8527
1727146172651000
0.0000
raldana-dualsentieonSNP*segduphet
99.4013
99.7344
99.0704
90.7424
1727146172651621
0.6173
raldana-dualsentieonSNPtvHG002compoundhethomalt
99.8228
99.7344
99.9113
42.6999
33799338032
66.6667
egarrison-hhgaSNPtiHG002complexvar*
99.8425
99.7343
99.9509
17.5278
5070851351507107249148
59.4378
hfeng-pmm3SNPtvmap_l125_m2_e0homalt
99.7590
99.7341
99.7838
69.7058
6001166001135
38.4615
hfeng-pmm3SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.8225
99.7340
99.9112
51.8392
11253112510
0.0000
hfeng-pmm2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.8225
99.7340
99.9112
52.5895
11253112510
0.0000
raldana-dualsentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.8668
99.7340
100.0000
42.5727
11253112500
mlin-fermikitSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
98.5545
99.7340
97.4026
53.7630
1125311253023
76.6667
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.8668
99.7340
100.0000
52.3709
11253112500
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.8668
99.7340
100.0000
42.7189
11253112500
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.8668
99.7340
100.0000
43.5354
11253111800
hfeng-pmm2SNPtvmap_l150_m2_e1homalt
99.7219
99.7339
99.7098
74.0785
4123114123124
33.3333
hfeng-pmm1SNPtvmap_l150_m2_e1homalt
99.7219
99.7339
99.7098
73.9872
4123114123124
33.3333
eyeh-varpipeSNPtvmap_l150_m2_e1homalt
99.7814
99.7339
99.8289
76.4129
412311408373
42.8571
ltrigg-rtg1SNPtvmap_l150_m2_e1homalt
99.8426
99.7339
99.9516
72.6103
412311412722
100.0000
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.8666
99.7336
100.0000
51.5008
22466224600
ndellapenna-hhgaSNPtv*het
99.8309
99.7335
99.9285
20.7977
590119157759013842245
10.6635