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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 212 213 214 215 216 217 218 219 220 ... 1720 1721 » 10751-10800 / 86044 show all
astatham-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8726	99.7455	100.0000	62.0155	784	2	784	0	0
cchapple-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8726	99.7455	100.0000	58.2576	784	2	781	0	0
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8726	99.7455	100.0000	62.1439	784	2	784	0	0
hfeng-pmm2	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5485	99.7455	99.3523	71.7771	3528	9	3528	23	22	95.6522
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8726	99.7455	100.0000	61.9602	784	2	784	0	0
gduggal-bwafb	SNP	tv	HG002complexvar	*	99.7871	99.7453	99.8289	23.3366	245528	627	245605	421	174	41.3302
egarrison-hhga	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8164	99.7447	99.8882	43.9520	6252	16	6253	7	5	71.4286
hfeng-pmm1	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8642	99.7447	99.9840	43.8336	6252	16	6252	1	1	100.0000
ltrigg-rtg1	SNP	*	map_l100_m2_e1	homalt	99.8200	99.7446	99.8955	62.4711	27725	71	27724	29	26	89.6552
ltrigg-rtg1	SNP	*	map_l100_m1_e0	homalt	99.8221	99.7445	99.8999	60.0030	26934	69	26933	27	24	88.8889
astatham-gatk	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8537	99.7443	99.9634	30.7478	2731	7	2731	1	1	100.0000
egarrison-hhga	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8538	99.7443	99.9634	32.0149	2731	7	2732	1	0	0.0000
ckim-dragen	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8538	99.7443	99.9634	29.9590	2731	7	2732	1	1	100.0000
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	het	98.2863	99.7441	96.8705	43.6595	4677	12	4674	151	1	0.6623
eyeh-varpipe	SNP	tv	map_l125_m2_e1	het	96.8040	99.7441	94.0321	77.0079	10526	27	10415	661	13	1.9667
ckim-gatk	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.7823	99.7440	99.8206	33.3561	3896	10	3895	7	3	42.8571
ltrigg-rtg1	SNP	tv	map_l125_m1_e0	homalt	99.8377	99.7440	99.9316	65.7995	5845	15	5846	4	4	100.0000
hfeng-pmm2	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.2106	99.7440	98.6829	40.0729	1948	5	1948	26	25	96.1538
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.7555	99.7439	99.7671	54.1386	4284	11	4284	10	2	20.0000
raldana-dualsentieon	INDEL	I16_PLUS	*	homalt	97.4343	99.7438	95.2294	67.8023	1557	4	1557	78	76	97.4359
ltrigg-rtg2	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8311	99.7438	99.9184	52.5299	17133	44	17145	14	9	64.2857
bgallagher-sentieon	INDEL	I16_PLUS	*	homalt	97.0698	99.7438	94.5355	72.0279	1557	4	1557	90	87	96.6667
ckim-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8126	99.7437	99.8815	55.8039	25294	65	25297	30	17	56.6667
gduggal-bwafb	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.6797	99.7436	99.6160	62.2679	7001	18	7004	27	15	55.5556
jlack-gatk	INDEL	D6_15	HG002complexvar	homalt	99.0234	99.7434	98.3137	61.3807	1166	3	1166	20	19	95.0000
hfeng-pmm3	INDEL	D6_15	HG002complexvar	homalt	99.5730	99.7434	99.4032	61.3382	1166	3	1166	7	6	85.7143
jli-custom	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8303	99.7434	99.9174	59.7828	10883	28	10881	9	5	55.5556
ltrigg-rtg1	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8395	99.7434	99.9357	57.3637	10883	28	10887	7	4	57.1429
hfeng-pmm1	INDEL	D6_15	HG002complexvar	homalt	99.5730	99.7434	99.4032	61.2103	1166	3	1166	7	7	100.0000
rpoplin-dv42	INDEL	D1_5	map_siren	homalt	99.4879	99.7432	99.2340	80.1520	1165	3	1166	9	7	77.7778
eyeh-varpipe	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7927	99.7427	99.8427	56.7264	3877	10	3809	6	3	50.0000
hfeng-pmm1	SNP	*	map_l150_m1_e0	homalt	99.7516	99.7427	99.7604	71.3075	11244	29	11244	27	10	37.0370
ckim-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8514	99.7426	99.9603	49.3467	10076	26	10076	4	4	100.0000
jlack-gatk	SNP	ti	HG002compoundhet	*	99.6570	99.7425	99.5716	36.7466	17433	45	17431	75	22	29.3333
ckim-dragen	SNP	tv	HG002compoundhet	*	99.7984	99.7422	99.8546	49.3913	8900	23	8925	13	8	61.5385
bgallagher-sentieon	SNP	tv	HG002compoundhet	*	99.7142	99.7422	99.6862	48.7920	8900	23	8895	28	11	39.2857
bgallagher-sentieon	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	*	99.7729	99.7421	99.8038	67.8356	9667	25	9667	19	15	78.9474
ltrigg-rtg1	SNP	*	map_l100_m2_e0	homalt	99.8182	99.7420	99.8945	62.4790	27452	71	27451	29	26	89.6552
hfeng-pmm1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.8339	99.7418	99.9261	75.6588	5409	14	5409	4	2	50.0000
hfeng-pmm1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.8339	99.7418	99.9261	75.6588	5409	14	5409	4	2	50.0000
hfeng-pmm2	SNP	*	map_l100_m0_e0	homalt	99.7504	99.7418	99.7590	63.9103	11590	30	11590	28	11	39.2857
ltrigg-rtg2	SNP	ti	map_siren	homalt	99.8455	99.7415	99.9498	49.3967	37818	98	37812	19	18	94.7368
ltrigg-rtg2	SNP	*	HG002complexvar	het	99.8358	99.7414	99.9305	18.3888	464296	1204	464515	323	94	29.1022
eyeh-varpipe	SNP	tv	map_l125_m2_e0	het	96.7900	99.7414	94.0082	76.9260	10415	27	10308	657	13	1.9787
rpoplin-dv42	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.2278	99.7413	98.7196	77.9938	771	2	771	10	6	60.0000
ghariani-varprowl	SNP	ti	HG002complexvar	*	99.5322	99.7412	99.3241	19.7678	507113	1316	507283	3452	789	22.8563
rpoplin-dv42	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	het	99.6119	99.7409	99.4832	68.3306	3080	8	3080	16	13	81.2500
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	het	99.6925	99.7409	99.6441	69.2652	3080	8	3080	11	9	81.8182
dgrover-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	het	99.6764	99.7409	99.6119	69.3315	3080	8	3080	12	9	75.0000
bgallagher-sentieon	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	het	99.6764	99.7409	99.6119	68.7361	3080	8	3080	12	9	75.0000

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