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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
10651-10700 / 86044 show all
ltrigg-rtg2SNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.8349
99.7617
99.9082
57.3447
108852610888106
60.0000
raldana-dualsentieonSNPtvmap_l100_m2_e0homalt
99.8479
99.7612
99.9348
60.9327
919222919263
50.0000
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.8403
99.7607
99.9201
44.0150
625315625353
60.0000
hfeng-pmm2SNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.8403
99.7607
99.9201
44.1798
625315625352
40.0000
hfeng-pmm3SNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.8722
99.7607
99.9840
43.9807
625315625311
100.0000
gduggal-bwafbSNPtisegduphomalt
99.8134
99.7602
99.8666
88.7165
74871874871010
100.0000
eyeh-varpipeSNPtvmap_l125_m2_e1*
97.8961
99.7599
96.1008
75.5270
16617401651367017
2.5373
jli-customSNP*HG002compoundhet*
99.7328
99.7599
99.7058
41.1267
2576062257577636
47.3684
rpoplin-dv42INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.8087
99.7595
99.8579
55.0764
2529861253003629
80.5556
ckim-gatkSNP*lowcmp_SimpleRepeat_diTR_11to50het
99.7595
99.7595
99.7595
70.6652
62211562211512
80.0000
ckim-dragenSNP*lowcmp_SimpleRepeat_diTR_11to50het
99.7361
99.7595
99.7127
70.2512
62211562481814
77.7778
ltrigg-rtg2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.3488
99.7594
98.9416
60.6388
248862524271
3.7037
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.3018
99.7594
98.8483
62.1581
248862489290
0.0000
hfeng-pmm1INDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.6995
99.7594
99.6396
71.1645
306877430687111109
98.1982
cchapple-customSNPtvlowcmp_SimpleRepeat_quadTR_11to50*
98.3439
99.7585
96.9689
38.4203
74341874542333
1.2876
cchapple-customSNPtilowcmp_SimpleRepeat_triTR_11to50het
99.6976
99.7579
99.6374
34.5809
24726247393
33.3333
ltrigg-rtg2SNPtvlowcmp_SimpleRepeat_homopolymer_6to10het
99.8076
99.7578
99.8575
57.0019
7002177006106
60.0000
jmaeng-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
96.9376
99.7576
94.2726
71.9833
82328235047
94.0000
jmaeng-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
96.9376
99.7576
94.2726
71.9833
82328235047
94.0000
jli-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
97.7460
99.7576
95.8140
68.5212
82328243635
97.2222
jli-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
97.7460
99.7576
95.8140
68.5212
82328243635
97.2222
eyeh-varpipeSNPtvmap_l125_m2_e0*
97.8880
99.7574
96.0874
75.4411
16449401635666617
2.5526
ltrigg-rtg2SNP*map_sirenhomalt
99.8557
99.7571
99.9546
50.5157
55022134550102522
88.0000
raldana-dualsentieonSNPtvmap_l100_m1_e0homalt
99.8450
99.7567
99.9335
58.3702
902122902163
50.0000
ckim-dragenINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
99.7838
99.7565
99.8111
59.5001
163894016384315
16.1290
rpoplin-dv42INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.7968
99.7563
99.8374
54.8306
1473436147362417
70.8333
gduggal-bwavardINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
98.1127
99.7563
96.5225
56.9760
147343614683529422
79.7732
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.3728
99.7562
97.0272
61.9399
114562811456351343
97.7208
ltrigg-rtg1SNPtvmap_l150_m2_e0homalt
99.8529
99.7551
99.9509
72.6094
407310407422
100.0000
rpoplin-dv42SNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.8773
99.7549
100.0000
64.8765
12213122300
hfeng-pmm1SNP*map_l150_m2_e1homalt
99.7632
99.7548
99.7717
73.5145
1179829117982710
37.0370
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
99.7914
99.7547
99.8281
43.5620
406710406573
42.8571
ckim-gatkINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
99.8282
99.7547
99.9018
44.2986
406710407041
25.0000
bgallagher-sentieonSNPtimap_sirenhomalt
99.8535
99.7547
99.9524
48.7705
3782393378171816
88.8889
jmaeng-gatkINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
99.8282
99.7547
99.9018
44.3519
406710407041
25.0000
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.5998
99.7544
99.4458
51.6487
1015325105875958
98.3051
hfeng-pmm1SNPtimap_l150_m1_e0homalt
99.7748
99.7543
99.7952
71.0227
7309187309156
40.0000
hfeng-pmm2SNPtvsegduphet
99.5467
99.7541
99.3402
91.9297
5274135270350
0.0000
bgallagher-sentieonSNPtvsegduphet
99.2561
99.7541
98.7631
92.1695
5274135270660
0.0000
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.3861
99.7540
99.0208
56.4034
243362427243
12.5000
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
97.6040
99.7536
95.5451
59.8944
5667145662264263
99.6212
ckim-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.6801
99.7532
99.6071
56.0538
27890692788911011
10.0000
ckim-gatkINDELD16_PLUSHG002compoundhethet
88.7912
99.7531
80.0000
59.4286
40412847168
95.7746
ltrigg-rtg1SNPtvmap_l125_m2_e1homalt
99.8435
99.7530
99.9341
68.3791
605915606544
100.0000
ckim-dragenINDELI6_15HG002complexvarhomalt
97.8586
99.7529
96.0349
55.1086
1211312115050
100.0000
ltrigg-rtg2SNPtiHG002complexvarhet
99.8501
99.7528
99.9475
16.9710
31398877831399216546
27.8788
dgrover-gatkINDELI1_5map_sirenhomalt
99.6298
99.7525
99.5074
78.6951
12093121264
66.6667
cchapple-customSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8364
99.7525
99.9204
39.9139
10077251003686
75.0000
hfeng-pmm2INDELI1_5map_sirenhomalt
99.6707
99.7525
99.5892
76.9508
12093121254
80.0000
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.7709
99.7523
97.8086
67.6045
181214518121406388
95.5665