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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 209 210 211 212 213 214 215 216 217 ... 1720 1721 » 10601-10650 / 86044 show all
hfeng-pmm1	SNP	tv	HG002compoundhet	hetalt	99.8839	99.7680	100.0000	23.0769	860	2	860	0	0
gduggal-bwafb	SNP	*	HG002compoundhet	hetalt	99.8259	99.7680	99.8839	24.0741	860	2	860	1	1	100.0000
gduggal-bwafb	SNP	tv	HG002compoundhet	hetalt	99.8259	99.7680	99.8839	24.0741	860	2	860	1	1	100.0000
gduggal-snapfb	SNP	*	HG002compoundhet	hetalt	97.7828	99.7680	95.8751	27.4859	860	2	860	37	8	21.6216
gduggal-snapfb	SNP	tv	HG002compoundhet	hetalt	97.7828	99.7680	95.8751	27.4859	860	2	860	37	8	21.6216
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.6651	99.7679	99.5625	58.6903	3869	9	3869	17	0	0.0000
ltrigg-rtg2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5424	99.7679	99.3178	59.4259	3869	9	3931	27	1	3.7037
qzeng-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.3011	99.7679	98.8387	65.0271	3869	9	3830	45	3	6.6667
egarrison-hhga	SNP	*	map_l100_m2_e0	homalt	99.8491	99.7675	99.9309	63.4300	27459	64	27459	19	18	94.7368
raldana-dualsentieon	SNP	ti	segdup	het	99.4118	99.7672	99.0589	90.1934	12002	28	12000	114	1	0.8772
ndellapenna-hhga	SNP	*	*	het	99.8554	99.7670	99.9441	18.2036	1869221	4366	1869241	1046	128	12.2371
gduggal-snapfb	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	97.1716	99.7669	94.7078	58.2028	856	2	859	48	6	12.5000
hfeng-pmm1	SNP	tv	map_l250_m1_e0	homalt	99.4179	99.7664	99.0719	87.2031	854	2	854	8	4	50.0000
hfeng-pmm2	SNP	tv	map_l250_m1_e0	homalt	99.4179	99.7664	99.0719	87.2692	854	2	854	8	4	50.0000
gduggal-bwafb	SNP	*	HG002complexvar	*	99.8109	99.7664	99.8554	20.0831	752623	1762	752783	1090	464	42.5688
rpoplin-dv42	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.6495	99.7661	99.5333	55.1309	853	2	853	4	1	25.0000
ltrigg-rtg2	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	het	99.5345	99.7661	99.3039	36.1103	2133	5	2140	15	2	13.3333
jlack-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.5795	99.7661	99.3937	76.6906	2133	5	2131	13	5	38.4615
jli-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8361	99.7661	99.9062	74.5708	2133	5	2131	2	1	50.0000
hfeng-pmm1	SNP	ti	map_l150_m2_e1	homalt	99.7855	99.7660	99.8049	73.2531	7675	18	7675	15	6	40.0000
egarrison-hhga	SNP	tv	*	het	99.8548	99.7659	99.9438	20.8578	590311	1385	590332	332	44	13.2530
raldana-dualsentieon	SNP	tv	segdup	*	99.5671	99.7656	99.3693	91.0002	8512	20	8508	54	6	11.1111
mlin-fermikit	SNP	tv	func_cds	homalt	99.4152	99.7653	99.0676	23.6994	1700	4	1700	16	14	87.5000
ckim-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.3687	99.7649	97.0110	61.9339	11457	27	11457	353	345	97.7337
astatham-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.3940	99.7649	97.0603	61.7981	11457	27	11457	347	341	98.2709
raldana-dualsentieon	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.6475	99.7647	99.5305	49.7048	848	2	848	4	4	100.0000
hfeng-pmm2	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7647	99.7647	99.7647	48.5783	848	2	848	2	2	100.0000
jli-custom	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.8234	99.7647	99.8822	49.2225	848	2	848	1	1	100.0000
ckim-dragen	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.5305	99.7647	99.2974	52.1032	848	2	848	6	6	100.0000
ckim-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.5862	99.7647	99.4083	59.0715	17809	42	17808	106	7	6.6038
jmaeng-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.6475	99.7647	99.5305	50.8083	848	2	848	4	4	100.0000
dgrover-gatk	SNP	tv	HG002compoundhet	*	99.7478	99.7647	99.7310	49.0520	8902	21	8897	24	15	62.5000
bgallagher-sentieon	SNP	*	map_siren	homalt	99.8557	99.7643	99.9473	50.0857	55026	130	55017	29	25	86.2069
gduggal-bwafb	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	98.1269	99.7642	96.5426	62.1131	2538	6	2541	91	11	12.0879
eyeh-varpipe	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	96.1521	99.7642	92.7925	63.8373	2538	6	2459	191	10	5.2356
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.7054	99.7642	99.6466	52.8246	2538	6	2538	9	1	11.1111
jli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.5489	99.7642	99.3346	49.7344	2538	6	2538	17	0	0.0000
hfeng-pmm2	SNP	tv	HG002compoundhet	homalt	99.7933	99.7639	99.8228	43.5008	3380	8	3380	6	5	83.3333
hfeng-pmm1	SNP	ti	map_l150_m2_e0	homalt	99.7833	99.7637	99.8030	73.2106	7598	18	7598	15	6	40.0000
eyeh-varpipe	SNP	*	map_siren	het	98.0835	99.7637	96.4589	61.2396	90776	215	87713	3220	51	1.5839
raldana-dualsentieon	SNP	tv	map_l100_m2_e1	homalt	99.8494	99.7635	99.9354	60.9109	9280	22	9280	6	3	50.0000
mlin-fermikit	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	94.2645	99.7630	89.3404	69.5631	1684	4	1693	202	155	76.7327
bgallagher-sentieon	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.8222	99.7630	99.8814	64.1429	1684	4	1684	2	2	100.0000
dgrover-gatk	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.8814	99.7630	100.0000	64.2235	1684	4	1684	0	0
egarrison-hhga	SNP	*	map_l100_m1_e0	homalt	99.8480	99.7630	99.9332	60.8894	26939	64	26939	18	17	94.4444
ckim-gatk	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.8814	99.7630	100.0000	64.0862	1684	4	1684	0	0
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	96.5155	99.7628	93.4730	54.4025	6728	16	6559	458	33	7.2052
ckim-dragen	INDEL	D1_5	*	het	99.5957	99.7625	99.4294	59.4097	87366	208	87308	501	64	12.7745
cchapple-custom	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8562	99.7624	99.9502	47.5635	20151	48	20069	10	7	70.0000
jmaeng-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8563	99.7624	99.9504	49.5168	10078	24	10078	5	5	100.0000

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