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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 208 209 210 211 212 213 214 215 216 ... 1720 1721 » 10551-10600 / 86044 show all
dgrover-gatk	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8855	99.7712	100.0000	34.7956	1308	3	1308	0	0
jli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.2647	99.7712	98.7633	53.6568	5668	13	5670	71	69	97.1831
eyeh-varpipe	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8435	99.7712	99.9160	32.7499	1308	3	1190	1	1	100.0000
ckim-dragen	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	86.9392	99.7712	77.0318	47.2507	436	1	436	130	130	100.0000
gduggal-bwafb	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	97.8070	99.7711	95.9189	66.2738	3922	9	3925	167	16	9.5808
jmaeng-gatk	SNP	*	func_cds	homalt	99.8852	99.7707	100.0000	21.6496	6963	16	6963	0	0
ckim-gatk	SNP	*	func_cds	homalt	99.8852	99.7707	100.0000	21.5790	6963	16	6963	0	0
ltrigg-rtg2	SNP	tv	HG002complexvar	*	99.8482	99.7705	99.9260	21.7021	245590	565	245834	182	72	39.5604
jli-custom	SNP	tv	*	hetalt	99.8277	99.7704	99.8851	43.3225	869	2	869	1	1	100.0000
gduggal-bwafb	SNP	*	*	hetalt	99.5989	99.7704	99.4279	53.2620	869	2	869	5	5	100.0000
gduggal-bwafb	SNP	tv	*	hetalt	99.5989	99.7704	99.4279	53.2620	869	2	869	5	5	100.0000
gduggal-snapfb	SNP	*	*	hetalt	79.7614	99.7704	66.4373	62.1965	869	2	869	439	29	6.6059
gduggal-snapfb	SNP	tv	*	hetalt	79.7614	99.7704	66.4373	62.1965	869	2	869	439	29	6.6059
ckim-dragen	SNP	*	*	hetalt	99.3162	99.7704	98.8662	49.3103	869	2	872	10	9	90.0000
ckim-dragen	SNP	tv	*	hetalt	99.3162	99.7704	98.8662	49.3103	869	2	872	10	9	90.0000
jli-custom	SNP	*	*	hetalt	99.8277	99.7704	99.8851	43.3225	869	2	869	1	1	100.0000
hfeng-pmm3	SNP	*	*	hetalt	99.8277	99.7704	99.8851	46.7890	869	2	869	1	1	100.0000
hfeng-pmm3	SNP	tv	*	hetalt	99.8277	99.7704	99.8851	46.7890	869	2	869	1	1	100.0000
hfeng-pmm1	SNP	*	*	hetalt	99.7131	99.7704	99.6560	48.7962	869	2	869	3	3	100.0000
hfeng-pmm1	SNP	*	HG002complexvar	*	99.8780	99.7704	99.9859	18.8078	752649	1732	752504	106	51	48.1132
hfeng-pmm1	SNP	tv	*	hetalt	99.7131	99.7704	99.6560	48.7962	869	2	869	3	3	100.0000
hfeng-pmm2	SNP	*	*	hetalt	99.8851	99.7704	100.0000	49.0323	869	2	869	0	0
hfeng-pmm2	SNP	tv	*	hetalt	99.8851	99.7704	100.0000	49.0323	869	2	869	0	0
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.7241	99.7700	99.6783	64.5024	2169	5	2169	7	0	0.0000
ltrigg-rtg2	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8849	99.7700	100.0000	52.7633	6074	14	6077	0	0
egarrison-hhga	SNP	*	map_l100_m2_e1	homalt	99.8506	99.7698	99.9315	63.4220	27732	64	27732	19	18	94.7368
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.0758	99.7696	98.3916	38.1103	3897	9	3854	63	6	9.5238
jlack-gatk	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.6292	99.7696	99.4893	34.4273	3897	9	3896	20	3	15.0000
hfeng-pmm1	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7530	99.7694	99.7366	55.3284	6058	14	6058	16	16	100.0000
hfeng-pmm3	SNP	*	map_l125_m1_e0	homalt	99.7929	99.7693	99.8165	66.4802	16866	39	16866	31	13	41.9355
hfeng-pmm2	SNP	*	HG002complexvar	*	99.8743	99.7689	99.9799	18.8346	752638	1743	752495	151	59	39.0728
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	98.1504	99.7689	96.5836	55.8513	9499	22	9499	336	332	98.8095
dgrover-gatk	SNP	ti	HG002compoundhet	het	99.7790	99.7685	99.7895	39.8442	9483	22	9481	20	14	70.0000
hfeng-pmm2	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.8696	99.7685	99.9710	64.2990	3447	8	3447	1	1	100.0000
hfeng-pmm2	SNP	ti	map_l100_m0_e0	homalt	99.7813	99.7685	99.7941	63.0398	7756	18	7756	16	7	43.7500
ltrigg-rtg2	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8841	99.7685	100.0000	57.9364	3878	9	3877	0	0
jli-custom	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.4050	99.7685	99.0441	61.4043	35337	82	35333	341	20	5.8651
qzeng-custom	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7805	99.7685	99.7926	58.3234	3878	9	3850	8	7	87.5000
bgallagher-sentieon	SNP	ti	HG002compoundhet	het	99.8158	99.7685	99.8631	39.5979	9483	22	9481	13	6	46.1538
ckim-dragen	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.7253	99.7681	99.6824	38.1649	3442	8	3453	11	4	36.3636
ckim-dragen	SNP	*	HG002compoundhet	hetalt	99.8839	99.7680	100.0000	22.0308	860	2	860	0	0
ckim-dragen	SNP	tv	HG002compoundhet	hetalt	99.8839	99.7680	100.0000	22.0308	860	2	860	0	0
jli-custom	SNP	tv	HG002compoundhet	hetalt	99.8839	99.7680	100.0000	23.0769	860	2	860	0	0
hfeng-pmm2	SNP	*	HG002compoundhet	hetalt	99.8839	99.7680	100.0000	23.2143	860	2	860	0	0
hfeng-pmm2	SNP	tv	HG002compoundhet	hetalt	99.8839	99.7680	100.0000	23.2143	860	2	860	0	0
hfeng-pmm3	SNP	*	HG002compoundhet	hetalt	99.8839	99.7680	100.0000	22.8700	860	2	860	0	0
hfeng-pmm3	SNP	ti	map_l150_m1_e0	homalt	99.7816	99.7680	99.7952	70.9268	7310	17	7310	15	6	40.0000
hfeng-pmm3	SNP	tv	HG002compoundhet	hetalt	99.8839	99.7680	100.0000	22.8700	860	2	860	0	0
jli-custom	SNP	*	HG002compoundhet	hetalt	99.8839	99.7680	100.0000	23.0769	860	2	860	0	0
hfeng-pmm1	SNP	*	HG002compoundhet	hetalt	99.8839	99.7680	100.0000	23.0769	860	2	860	0	0

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