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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 206 207 208 209 210 211 212 213 214 ... 1720 1721 » 10451-10500 / 86044 show all
gduggal-bwafb	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	96.9550	99.7815	94.2842	72.3244	1827	4	1831	111	5	4.5045
eyeh-varpipe	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	95.0884	99.7815	90.8168	71.4761	1827	4	1790	181	4	2.2099
jlack-gatk	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	het	97.3331	99.7813	95.0021	46.2479	11408	25	11405	600	4	0.6667
ckim-dragen	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.7593	99.7812	99.7374	46.7118	2280	5	2279	6	2	33.3333
ckim-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.8250	99.7812	99.8688	48.0455	2280	5	2283	3	0	0.0000
dgrover-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.8468	99.7812	99.9125	47.3260	2280	5	2283	2	0	0.0000
bgallagher-sentieon	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.8468	99.7812	99.9125	46.5872	2280	5	2283	2	0	0.0000
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.8250	99.7812	99.8688	48.1162	2280	5	2283	3	0	0.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.7580	99.7808	99.7353	72.9432	21851	48	21851	58	58	100.0000
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.4536	99.7807	99.1285	70.2141	910	2	910	8	5	62.5000
raldana-dualsentieon	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.6714	99.7807	99.5624	68.6019	910	2	910	4	3	75.0000
ckim-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.2908	99.7807	98.8056	70.5939	910	2	910	11	8	72.7273
bgallagher-sentieon	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.1285	99.7807	98.4848	70.2320	910	2	910	14	11	78.5714
astatham-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.2908	99.7807	98.8056	70.4524	910	2	910	11	8	72.7273
dgrover-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.2366	99.7807	98.6985	70.3346	910	2	910	12	9	75.0000
ckim-vqsr	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.2908	99.7807	98.8056	70.5939	910	2	910	11	8	72.7273
jlack-gatk	SNP	*	segdup	het	97.2497	99.7806	94.8441	94.7945	17279	38	17273	939	5	0.5325
ckim-dragen	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8088	99.7806	99.8371	58.7309	28198	62	28192	46	19	41.3043
rpoplin-dv42	SNP	ti	segdup	*	99.7773	99.7799	99.7748	89.3733	19494	43	19492	44	19	43.1818
hfeng-pmm1	INDEL	I1_5	*	homalt	99.7725	99.7799	99.7651	52.5960	60295	133	60299	142	137	96.4789
astatham-gatk	SNP	*	func_cds	*	99.8621	99.7796	99.9448	24.2600	18110	40	18107	10	0	0.0000
astatham-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	98.1709	99.7794	96.6134	55.6813	9500	21	9500	333	330	99.0991
ckim-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	98.1456	99.7794	96.5643	55.8438	9500	21	9500	338	334	98.8166
ckim-dragen	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.6964	99.7792	99.6138	75.7541	3615	8	3611	14	6	42.8571
jlack-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	98.7235	99.7792	97.6898	36.3761	7231	16	7231	171	170	99.4152
jlack-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.8160	99.7792	99.8528	43.7655	4068	9	4071	6	1	16.6667
hfeng-pmm3	SNP	ti	map_l150_m2_e1	homalt	99.7920	99.7790	99.8050	73.1684	7676	17	7676	15	6	40.0000
ckim-dragen	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	95.1348	99.7788	90.9039	60.3967	3158	7	3158	316	314	99.3671
cchapple-custom	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8050	99.7787	99.8314	54.7146	11271	25	11248	19	17	89.4737
hfeng-pmm2	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.8432	99.7787	99.9077	76.2675	5411	12	5411	5	3	60.0000
hfeng-pmm2	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.8432	99.7787	99.9077	76.2675	5411	12	5411	5	3	60.0000
hfeng-pmm1	INDEL	*	*	homalt	99.6836	99.7787	99.5886	55.4406	124895	277	124903	516	501	97.0930
jli-custom	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8769	99.7786	99.9754	44.9525	4056	9	4056	1	1	100.0000
eyeh-varpipe	SNP	tv	map_l100_m2_e1	*	97.4090	99.7785	95.1495	70.7126	25227	56	25050	1277	21	1.6445
eyeh-varpipe	SNP	tv	map_l125_m1_e0	homalt	99.8200	99.7782	99.8619	70.0620	5847	13	5785	8	4	50.0000
hfeng-pmm2	SNP	*	map_l150_m1_e0	homalt	99.7650	99.7782	99.7517	71.3283	11248	25	11248	28	11	39.2857
ckim-dragen	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8889	99.7780	100.0000	51.4175	2247	5	2262	0	0
astatham-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8889	99.7780	100.0000	51.4582	2247	5	2247	0	0
jmaeng-gatk	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	het	99.8093	99.7776	99.8411	72.0082	3141	7	3141	5	3	60.0000
ckim-gatk	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	het	99.8252	99.7776	99.8728	71.9221	3141	7	3141	4	3	75.0000
hfeng-pmm3	SNP	*	map_l125_m2_e1	homalt	99.8003	99.7775	99.8231	68.9786	17493	39	17493	31	13	41.9355
hfeng-pmm1	SNP	tv	segdup	*	99.7305	99.7773	99.6837	90.5181	8513	19	8509	27	6	22.2222
jli-custom	SNP	tv	segdup	*	99.5673	99.7773	99.3581	90.4270	8513	19	8513	55	6	10.9091
egarrison-hhga	SNP	*	map_siren	homalt	99.8639	99.7770	99.9510	53.4112	55033	123	55033	27	24	88.8889
hfeng-pmm3	SNP	ti	map_l150_m2_e0	homalt	99.7899	99.7768	99.8030	73.1277	7599	17	7599	15	6	40.0000
bgallagher-sentieon	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.6951	99.7767	99.6136	53.1211	6701	15	6703	26	9	34.6154
dgrover-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.6877	99.7767	99.5988	53.6597	6701	15	6703	27	8	29.6296
jlack-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7395	99.7766	99.7024	56.2348	14737	33	14739	44	17	38.6364
cchapple-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.5359	99.7766	99.2963	59.3496	2680	6	2681	19	1	5.2632
gduggal-bwafb	SNP	ti	HG002complexvar	*	99.8223	99.7766	99.8681	18.4222	507301	1136	507384	670	291	43.4328

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