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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 205 206 207 208 209 210 211 212 213 ... 1720 1721 » 10401-10450 / 86044 show all
ckim-dragen	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	94.5750	99.7860	89.8811	59.7231	2798	6	2798	315	314	99.6825
jmaeng-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	97.6444	99.7860	95.5928	54.4932	2798	6	2798	129	127	98.4496
eyeh-varpipe	SNP	tv	map_l125_m2_e1	homalt	99.8263	99.7860	99.8666	72.2636	6061	13	5990	8	4	50.0000
raldana-dualsentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	97.5933	99.7860	95.4949	53.0674	2798	6	2798	132	131	99.2424
egarrison-hhga	SNP	tv	map_siren	homalt	99.8636	99.7854	99.9419	55.8765	17203	37	17203	10	9	90.0000
bgallagher-sentieon	SNP	tv	map_siren	homalt	99.8607	99.7854	99.9361	52.7521	17203	37	17200	11	9	81.8182
ltrigg-rtg1	SNP	tv	map_l100_m2_e1	homalt	99.8548	99.7850	99.9246	63.4100	9282	20	9281	7	4	57.1429
ckim-dragen	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	97.1997	99.7848	94.7452	59.6307	8348	18	8348	463	461	99.5680
cchapple-custom	INDEL	*	*	homalt	99.5578	99.7843	99.3323	55.6558	124902	270	124673	838	810	96.6587
gduggal-snapfb	SNP	tv	*	homalt	99.5195	99.7842	99.2562	25.9790	376309	814	376328	2820	182	6.4539
eyeh-varpipe	SNP	tv	map_l125_m2_e0	homalt	99.8247	99.7839	99.8655	72.1762	6004	13	5941	8	4	50.0000
gduggal-bwafb	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	97.2251	99.7837	94.7945	71.8473	1384	3	1384	76	5	6.5790
bgallagher-sentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.5683	99.7837	99.3539	64.4733	1384	3	1384	9	0	0.0000
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.6400	99.7837	99.4968	65.7726	1384	3	1384	7	0	0.0000
dgrover-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.5325	99.7837	99.2826	64.9925	1384	3	1384	10	0	0.0000
hfeng-pmm2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.8700	99.7836	99.9566	69.9578	11527	25	11527	5	3	60.0000
hfeng-pmm2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.8700	99.7836	99.9566	69.9578	11527	25	11527	5	3	60.0000
hfeng-pmm3	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.8917	99.7835	100.0000	57.3148	461	1	461	0	0
jli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.7835	99.7835	99.7835	58.0762	461	1	461	1	1	100.0000
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.7835	99.7835	99.7835	59.1512	461	1	461	1	1	100.0000
astatham-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.3534	99.7835	98.9270	63.9598	461	1	461	5	5	100.0000
bgallagher-sentieon	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.0333	99.7835	98.2942	63.8675	461	1	461	8	8	100.0000
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.6757	99.7835	99.5680	64.0528	461	1	461	2	2	100.0000
raldana-dualsentieon	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.7835	99.7835	99.7835	62.5000	461	1	461	1	1	100.0000
raldana-dualsentieon	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.8917	99.7835	100.0000	28.5271	461	1	461	0	0
dgrover-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.2465	99.7835	98.7152	64.0769	461	1	461	6	6	100.0000
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.3534	99.7835	98.9270	64.3185	461	1	461	5	5	100.0000
hfeng-pmm1	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.8917	99.7835	100.0000	29.5107	461	1	461	0	0
ckim-dragen	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	96.7471	99.7835	93.8900	68.9437	461	1	461	30	30	100.0000
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.3534	99.7835	98.9270	64.3185	461	1	461	5	5	100.0000
jli-custom	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.6647	99.7834	99.5462	33.7248	4606	10	4607	21	2	9.5238
ltrigg-rtg2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8914	99.7831	100.0000	57.0031	1380	3	1406	0	0
ckim-dragen	SNP	*	HG002compoundhet	*	99.7929	99.7831	99.8027	41.5217	25766	56	25804	51	26	50.9804
ckim-dragen	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8914	99.7831	100.0000	57.0233	1380	3	1386	0	0
hfeng-pmm2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8914	99.7831	100.0000	58.8551	1380	3	1380	0	0
astatham-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8914	99.7831	100.0000	57.0227	1380	3	1380	0	0
rpoplin-dv42	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.4057	99.7831	99.0312	77.4842	920	2	920	9	6	66.6667
ltrigg-rtg1	SNP	tv	map_l100_m2_e0	homalt	99.8534	99.7829	99.9239	63.3991	9194	20	9193	7	4	57.1429
egarrison-hhga	SNP	ti	map_l100_m1_e0	homalt	99.8579	99.7829	99.9331	60.2302	17921	39	17921	12	12	100.0000
hfeng-pmm1	SNP	ti	map_l125_m1_e0	homalt	99.8143	99.7827	99.8460	66.1307	11021	24	11021	17	7	41.1765
ckim-gatk	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.4847	99.7826	99.1887	63.5467	35342	77	35331	289	22	7.6125
ckim-gatk	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.7892	99.7825	99.7959	36.4791	7339	16	7335	15	5	33.3333
ltrigg-rtg2	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.8729	99.7825	99.9635	34.6365	2752	6	2741	1	1	100.0000
astatham-gatk	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.8911	99.7825	100.0000	36.2077	2752	6	2752	0	0
ndellapenna-hhga	SNP	ti	*	het	99.8668	99.7824	99.9512	16.9483	1279102	2789	1279103	624	83	13.3013
hfeng-pmm2	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.6591	99.7822	99.5363	71.5494	30694	67	30694	143	139	97.2028
qzeng-custom	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.7317	99.7821	99.6812	62.4851	10075	22	10007	32	21	65.6250
hfeng-pmm2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.8615	99.7820	99.9410	72.3104	16938	37	16938	10	6	60.0000
hfeng-pmm2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.8615	99.7820	99.9410	72.3104	16938	37	16938	10	6	60.0000
ckim-dragen	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7545	99.7818	99.7273	51.7500	3658	8	3657	10	10	100.0000

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