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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
10351-10400 / 86044 show all
hfeng-pmm1INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8428
99.7906
99.8952
79.6675
953295310
0.0000
hfeng-pmm3INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8428
99.7906
99.8952
79.5848
953295310
0.0000
ckim-dragenINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.7904
99.7906
99.7901
80.0042
953295121
50.0000
dgrover-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.7906
99.7906
99.7906
80.5736
953295321
50.0000
bgallagher-sentieonINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.7906
99.7906
99.7906
80.2523
953295321
50.0000
astatham-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.7906
99.7906
99.7906
80.3781
953295321
50.0000
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.6741
99.7905
99.5579
54.7054
428694279191
5.2632
hfeng-pmm1SNPtimap_l125_m2_e1homalt
99.8210
99.7905
99.8515
68.6411
114342411434177
41.1765
eyeh-varpipeSNPtvmap_sirenhet
95.7583
99.7903
92.0396
63.5402
285496028096243018
0.7407
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.8273
99.7901
99.8645
55.6157
147393114740205
25.0000
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
97.4911
99.7899
95.2959
55.3475
9501209501469465
99.1471
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.1914
99.7899
96.6433
56.0900
9501209501330327
99.0909
ltrigg-rtg1SNPtvmap_l100_m1_e0homalt
99.8561
99.7899
99.9225
60.9412
902419902374
57.1429
ckim-dragenSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.8598
99.7898
99.9299
26.0373
14243142511
100.0000
gduggal-snapfbSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.2685
99.7898
98.7526
38.0155
142431425183
16.6667
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.7253
99.7898
99.6609
56.0602
6171136171212
9.5238
egarrison-hhgaSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.8598
99.7898
99.9299
28.4855
14243142510
0.0000
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.8463
99.7898
99.9029
55.0600
617113617161
16.6667
astatham-gatkSNPtifunc_cds*
99.8730
99.7897
99.9564
22.5679
13758291375660
0.0000
ltrigg-rtg2SNP*HG002complexvar*
99.8684
99.7896
99.9473
18.8678
7527971587752943397167
42.0655
jlack-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.0972
99.7896
96.4613
40.7376
4743104743174174
100.0000
hfeng-pmm3SNP*HG002complexvar*
99.8875
99.7894
99.9859
18.8968
752792158975264510640
37.7358
egarrison-hhgaSNPtimap_l100_m2_e1homalt
99.8593
99.7891
99.9296
62.7744
1845539184551313
100.0000
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
96.1382
99.7890
92.7451
61.9630
236552365185184
99.4595
hfeng-pmm3INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.5999
99.7890
99.4115
47.4486
2365523651413
92.8571
hfeng-pmm3SNPtvsegdup*
99.7247
99.7890
99.6604
90.6553
8514188510295
17.2414
jlack-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.4351
99.7890
99.0837
56.5880
27900592789925821
8.1395
jlack-gatkSNPtvsegdup*
97.7319
99.7890
95.7578
94.5195
85141885103777
1.8568
jmaeng-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.6771
99.7888
97.5899
57.2270
5669125669140139
99.2857
hfeng-pmm1SNPtimap_l125_m2_e0homalt
99.8195
99.7887
99.8502
68.6124
113342411334177
41.1765
hfeng-pmm2SNP*map_l150_m2_e1homalt
99.7760
99.7886
99.7633
73.5353
1180225118022811
39.2857
egarrison-hhgaINDELI1_5segduphomalt
99.4731
99.7886
99.1597
92.9261
472147244
100.0000
ckim-dragenINDELI1_5segduphomalt
99.4731
99.7886
99.1597
92.5718
472147244
100.0000
qzeng-customINDELI1_5segduphomalt
99.1688
99.7886
98.5567
91.3377
472147876
85.7143
ndellapenna-hhgaINDELI1_5segduphomalt
99.3684
99.7886
98.9518
92.7375
472147255
100.0000
hfeng-pmm2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7615
99.7879
99.7350
71.4307
18824188254
80.0000
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.8687
99.7876
97.9666
56.5178
3758837587876
97.4359
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.8687
99.7876
97.9666
56.5178
3758837587876
97.4359
ghariani-varprowlSNPtv**
98.9190
99.7874
98.0655
30.2667
9676202062967900190931348
7.0602
eyeh-varpipeSNP*map_l150_m1_e0homalt
99.8338
99.7871
99.8804
73.5129
112492410861138
61.5385
hfeng-pmm1SNP*map_l125_m1_e0homalt
99.8048
99.7870
99.8225
66.5790
1686936168693012
40.0000
egarrison-hhgaSNPtimap_l100_m2_e0homalt
99.8579
99.7870
99.9289
62.7872
1827039182701313
100.0000
dgrover-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
99.8508
99.7870
99.9147
58.6642
163943516393144
28.5714
ghariani-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
89.2684
99.7868
80.7560
85.2172
468147011274
66.0714
astatham-gatkSNPtisegduphomalt
99.8666
99.7868
99.9466
87.4281
748916748944
100.0000
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8931
99.7865
100.0000
53.0439
607513607800
ndellapenna-hhgaSNPtv**
99.8629
99.7865
99.9395
20.8763
9676202070967646586175
29.8635
hfeng-pmm2SNP*map_l150_m2_e0homalt
99.7735
99.7863
99.7607
73.5081
1167425116742811
39.2857
ckim-dragenSNP*segduphet
97.6498
99.7863
95.6029
93.5624
1728037172857955
0.6289
cchapple-customSNP*segduphet
99.4246
99.7863
99.0654
93.2744
1728037172781635
3.0675