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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
10201-10250 / 86044 show all
gduggal-snapfbSNPti*het
99.2278
99.8088
98.6535
22.6951
12794462451127998017470996
5.7012
jmaeng-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.9740
99.8086
98.1532
63.5791
8344168344157156
99.3631
jmaeng-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.9740
99.8086
98.1532
63.5791
8344168344157156
99.3631
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.0327
99.8086
98.2688
63.7648
8344168344147145
98.6395
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.0327
99.8086
98.2688
63.7648
8344168344147145
98.6395
egarrison-hhgaSNPtvHG002complexvarhomalt
99.8748
99.8086
99.9410
22.7459
94929182949385646
82.1429
hfeng-pmm1INDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8037
99.8082
99.7991
72.6490
2185742218574444
100.0000
gduggal-snapfbSNPti**
99.4335
99.8078
99.0620
21.3991
208151040082082093197151288
6.5331
dgrover-gatkINDELI16_PLUS*homalt
97.7415
99.8078
95.7591
72.2497
1558315586966
95.6522
cchapple-customINDELI16_PLUS*homalt
98.0326
99.8078
96.3194
65.1446
1558315445957
96.6102
jli-customSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.5883
99.8077
99.3700
59.7371
555241075552035227
7.6705
jlack-gatkINDEL*HG002complexvarhomalt
99.5756
99.8076
99.3448
56.8540
269755226988178171
96.0674
cchapple-customSNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.0953
99.8075
98.3931
40.1515
18148351818629710
3.3670
egarrison-hhgaSNPtv**
99.8815
99.8074
99.9558
20.9138
9678221868967852428112
26.1682
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.8441
99.8073
99.8810
33.7603
673213671481
12.5000
ghariani-varprowlSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
98.4008
99.8073
97.0334
44.7618
6732136738206131
63.5922
ckim-vqsrINDELI1_5map_l100_m1_e0homalt
99.5188
99.8069
99.2322
81.1709
517151743
75.0000
dgrover-gatkINDELI1_5map_l100_m1_e0homalt
99.4231
99.8069
99.0421
80.9489
517151754
80.0000
ckim-gatkINDELI1_5map_l100_m1_e0homalt
99.4231
99.8069
99.0421
81.1416
517151754
80.0000
gduggal-bwafbINDELI1_5map_l100_m1_e0homalt
99.3276
99.8069
98.8528
81.3813
517151764
66.6667
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.7380
99.8068
99.6692
75.6445
361673616126
50.0000
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.7930
99.8068
99.7792
75.7754
36167361683
37.5000
hfeng-pmm3SNPtvmap_l100_m2_e1homalt
99.8333
99.8065
99.8602
64.7574
9284189284135
38.4615
ndellapenna-hhgaSNPtvHG002complexvarhomalt
99.8464
99.8065
99.8864
22.8760
949271849493510897
89.8148
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.5830
99.8064
97.3892
55.2704
5670115670152151
99.3421
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.7633
99.8064
97.7418
57.2891
5670115670131129
98.4733
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.7289
99.8064
97.6744
57.4974
5670115670135133
98.5185
gduggal-snapfbSNPti*homalt
99.7832
99.8062
99.7602
19.1162
80148315568015321927269
13.9595
bgallagher-sentieonINDELD1_5*het
99.7512
99.8059
99.6966
58.6998
8740417087413266136
51.1278
raldana-dualsentieonSNPtisegdup*
99.6041
99.8055
99.4035
89.2386
1949938194971174
3.4188
ckim-dragenSNPtiHG002compoundhet*
99.7941
99.8055
99.7828
35.8899
1744434174573818
47.3684
dgrover-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
99.8478
99.8054
99.8902
58.2232
2820555282083120
64.5161
ckim-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
99.8174
99.8052
99.8295
60.0496
163973216396284
14.2857
eyeh-varpipeSNP*map_siren*
98.7590
99.8051
97.7347
59.1101
145943285141168327281
2.4756
jlack-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50het
99.2883
99.8050
98.7768
40.6294
460794603573
5.2632
egarrison-hhgaSNP**het
99.8773
99.8048
99.9499
18.3927
186993036571869954938124
13.2196
gduggal-snapfbSNP**het
98.9809
99.8048
98.1706
24.8638
186994336581870819348631567
4.4947
hfeng-pmm3SNPtvmap_l100_m2_e0homalt
99.8317
99.8046
99.8588
64.7570
9196189196135
38.4615
jli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.2231
99.8046
98.6484
46.1418
51071051097068
97.1429
jmaeng-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.5527
99.8046
97.3318
50.7832
5107105107140139
99.2857
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
97.4149
99.8046
95.1369
54.7737
5107105106261260
99.6169
hfeng-pmm2INDEL**homalt
99.6594
99.8043
99.5149
55.8756
124927245124935609588
96.5517
jlack-gatkSNP*segdup*
98.2374
99.8040
96.7192
93.4608
28012552800695016
1.6842
ckim-dragenINDEL*HG002complexvarhomalt
99.5434
99.8039
99.2843
57.4048
269745326911194188
96.9072
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
99.8650
99.8038
99.9264
43.6688
40698407231
33.3333
jli-customINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.8713
99.8037
99.9390
54.3200
14741291474294
44.4444
jli-customSNP*segduphet
99.4076
99.8037
99.0146
89.8653
1728334172831722
1.1628
eyeh-varpipeSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7839
99.8029
99.7650
51.9403
6076125943147
50.0000
ckim-vqsrSNP*func_cdshet
99.7448
99.8029
99.6867
36.7154
111392211136350
0.0000
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.8383
99.8028
99.8737
55.5058
2530950253073217
53.1250