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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 200 201 202 203 204 205 206 207 208 ... 1720 1721 » 10151-10200 / 86044 show all
raldana-dualsentieon	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.5318	99.8122	99.2530	67.9437	1063	2	1063	8	8	100.0000
jmaeng-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.3458	99.8122	98.8837	68.5948	1063	2	1063	12	12	100.0000
jlack-gatk	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.9413	99.8121	98.0856	65.0500	27626	52	27616	539	26	4.8238
jli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.8588	99.8119	99.9058	80.0075	1061	2	1061	1	1	100.0000
ckim-vqsr	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.8588	99.8119	99.9058	81.3717	1061	2	1061	1	1	100.0000
ckim-vqsr	SNP	ti	func_cds	het	99.7473	99.8119	99.6828	33.7510	8488	16	8486	27	0	0.0000
rpoplin-dv42	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8762	99.8119	99.9405	50.3909	10083	19	10083	6	5	83.3333
ckim-dragen	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7177	99.8119	99.6237	81.1758	1061	2	1059	4	2	50.0000
ckim-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.8119	99.8119	99.8119	81.3574	1061	2	1061	2	1	50.0000
ghariani-varprowl	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	97.8165	99.8119	95.8994	55.8743	10083	19	10103	432	262	60.6481
ghariani-varprowl	SNP	tv	func_cds	het	99.0291	99.8118	98.2586	43.0471	2652	5	2652	47	0	0.0000
ltrigg-rtg1	SNP	tv	func_cds	het	99.0291	99.8118	98.2586	27.7763	2652	5	2652	47	0	0.0000
ltrigg-rtg2	SNP	tv	func_cds	het	99.2144	99.8118	98.6240	27.1866	2652	5	2652	37	0	0.0000
ndellapenna-hhga	SNP	*	*	*	99.8818	99.8118	99.9519	18.1821	3048871	5748	3048919	1468	467	31.8120
qzeng-custom	SNP	*	func_cds	het	99.6863	99.8118	99.5610	32.9992	11140	21	11112	49	1	2.0408
gduggal-bwafb	INDEL	I1_5	map_l100_m2_e0	homalt	99.3440	99.8117	98.8806	82.8095	530	1	530	6	4	66.6667
ckim-vqsr	INDEL	I1_5	map_l100_m2_e0	homalt	99.5305	99.8117	99.2509	82.4688	530	1	530	4	3	75.0000
dgrover-gatk	INDEL	I1_5	map_l100_m2_e0	homalt	99.4371	99.8117	99.0654	82.2730	530	1	530	5	4	80.0000
ckim-gatk	INDEL	I1_5	map_l100_m2_e0	homalt	99.4371	99.8117	99.0654	82.4417	530	1	530	5	4	80.0000
jli-custom	SNP	ti	HG002compoundhet	*	99.7826	99.8112	99.7541	35.5495	17445	33	17445	43	22	51.1628
jpowers-varprowl	SNP	ti	HG002compoundhet	homalt	92.3856	99.8107	85.9888	37.4563	7380	14	7383	1203	882	73.3167
hfeng-pmm2	SNP	*	map_l125_m1_e0	homalt	99.8078	99.8107	99.8048	66.6048	16873	32	16873	33	14	42.4242
eyeh-varpipe	SNP	*	map_l125_m1_e0	homalt	99.8501	99.8107	99.8895	68.7779	16873	32	16269	18	10	55.5556
jlack-gatk	SNP	ti	segdup	*	98.4574	99.8106	97.1403	92.8551	19500	37	19498	574	10	1.7422
ckim-dragen	SNP	ti	segdup	*	98.5623	99.8106	97.3449	91.6401	19500	37	19505	532	9	1.6917
ckim-dragen	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	97.9356	99.8106	96.1297	54.5329	4744	9	4744	191	190	99.4764
cchapple-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.8715	99.8106	97.9499	33.5489	4744	9	4730	99	97	97.9798
ckim-gatk	SNP	ti	func_cds	homalt	99.9051	99.8104	100.0000	20.1183	5265	10	5265	0	0
jmaeng-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	97.8928	99.8104	96.0474	55.7633	3159	6	3159	130	127	97.6923
jmaeng-gatk	SNP	ti	func_cds	homalt	99.9051	99.8104	100.0000	20.1062	5265	10	5265	0	0
raldana-dualsentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	97.8473	99.8104	95.9599	54.4297	3159	6	3159	133	131	98.4962
dgrover-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8747	99.8104	99.9390	55.0186	14742	28	14744	9	4	44.4444
jli-custom	INDEL	D6_15	*	homalt	99.2923	99.8103	98.7797	52.7778	6314	12	6314	78	76	97.4359
dgrover-gatk	SNP	*	HG002compoundhet	*	99.8063	99.8102	99.8025	41.2435	25773	49	25766	51	36	70.5882
jmaeng-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.9047	99.8095	100.0000	67.8528	524	1	524	0	0
jpowers-varprowl	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.0596	99.8095	98.3209	76.9759	524	1	527	9	6	66.6667
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.9047	99.8095	100.0000	67.3317	524	1	524	0	0
ghariani-varprowl	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	98.7811	99.8095	97.7737	75.2184	524	1	527	12	6	50.0000
jlack-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.9047	99.8095	100.0000	67.7340	524	1	524	0	0
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	het	99.7312	99.8094	99.6531	71.4710	3142	6	3160	11	8	72.7273
dgrover-gatk	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	het	99.8411	99.8094	99.8729	71.5397	3142	6	3142	4	3	75.0000
rpoplin-dv42	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	het	99.7460	99.8094	99.6827	70.4841	3142	6	3142	10	6	60.0000
ckim-gatk	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.9045	99.8092	100.0000	64.1781	523	1	523	0	0
jli-custom	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.9045	99.8092	100.0000	65.9727	523	1	523	0	0
bgallagher-sentieon	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.9045	99.8092	100.0000	64.1043	523	1	523	0	0
astatham-gatk	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.9045	99.8092	100.0000	64.2026	523	1	523	0	0
dgrover-gatk	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.9045	99.8092	100.0000	64.4942	523	1	523	0	0
hfeng-pmm2	SNP	ti	map_l150_m1_e0	homalt	99.7953	99.8089	99.7817	70.9972	7313	14	7313	16	7	43.7500
jlack-gatk	SNP	ti	segdup	het	97.5937	99.8088	95.4748	94.2828	12007	23	12005	569	5	0.8787
cchapple-custom	SNP	ti	segdup	het	99.4449	99.8088	99.0837	92.7182	12007	23	12003	111	5	4.5045

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