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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 199 200 201 202 203 204 205 206 207 ... 1720 1721 » 10101-10150 / 86044 show all
cchapple-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.6636	99.8179	99.5098	78.3746	548	1	609	3	2	66.6667
astatham-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8179	99.8179	99.8179	80.9639	548	1	548	1	0	0.0000
bgallagher-sentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8179	99.8179	99.8179	80.8444	548	1	548	1	0	0.0000
hfeng-pmm2	SNP	*	map_l125_m2_e1	homalt	99.8146	99.8175	99.8118	69.0869	17500	32	17500	33	14	42.4242
eyeh-varpipe	SNP	*	map_l125_m2_e1	homalt	99.8554	99.8175	99.8934	71.0933	17500	32	16871	18	10	55.5556
ndellapenna-hhga	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8356	99.8174	99.8539	32.2109	2733	5	2734	4	3	75.0000
gduggal-snapfb	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.0045	99.8174	98.2047	40.5930	2733	5	2735	50	3	6.0000
hfeng-pmm3	SNP	ti	HG002complexvar	*	99.9019	99.8171	99.9868	17.4486	507506	930	507446	67	25	37.3134
hfeng-pmm3	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.9083	99.8168	100.0000	76.0545	545	1	545	0	0
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7255	99.8168	99.6344	77.0842	545	1	545	2	1	50.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.9083	99.8168	100.0000	76.4680	545	1	545	0	0
raldana-dualsentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7255	99.8168	99.6344	77.4526	545	1	545	2	2	100.0000
jmaeng-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7255	99.8168	99.6344	78.0409	545	1	545	2	2	100.0000
hfeng-pmm2	SNP	ti	map_l150_m2_e0	homalt	99.8031	99.8162	99.7900	73.1902	7602	14	7602	16	7	43.7500
ckim-gatk	INDEL	D1_5	*	het	99.6268	99.8162	99.4381	60.7761	87413	161	87419	494	126	25.5061
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.8397	99.8160	99.8635	64.2706	2170	4	2194	3	2	66.6667
ltrigg-rtg1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	98.9606	99.8160	98.1198	64.2712	2170	4	2244	43	1	2.3256
qzeng-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	98.9647	99.8160	98.1279	69.9341	2170	4	2149	41	1	2.4390
rpoplin-dv42	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.8619	99.8160	99.9079	64.2822	2170	4	2170	2	1	50.0000
eyeh-varpipe	SNP	*	map_l125_m2_e0	homalt	99.8542	99.8158	99.8925	71.0277	17343	32	16728	18	10	55.5556
hfeng-pmm2	SNP	*	map_l125_m2_e0	homalt	99.8130	99.8158	99.8101	69.0538	17343	32	17343	33	14	42.4242
hfeng-pmm2	SNP	ti	segdup	*	99.6754	99.8157	99.5355	89.6871	19501	36	19499	91	9	9.8901
dgrover-gatk	SNP	*	segdup	het	99.5334	99.8152	99.2533	91.5277	17285	32	17279	130	3	2.3077
ckim-vqsr	INDEL	I1_5	map_l100_m2_e1	homalt	99.5383	99.8148	99.2634	82.5064	539	1	539	4	3	75.0000
dgrover-gatk	INDEL	I1_5	map_l100_m2_e1	homalt	99.4465	99.8148	99.0809	82.3434	539	1	539	5	4	80.0000
ckim-gatk	INDEL	I1_5	map_l100_m2_e1	homalt	99.4465	99.8148	99.0809	82.4799	539	1	539	5	4	80.0000
gduggal-bwafb	INDEL	I1_5	map_l100_m2_e1	homalt	99.3548	99.8148	98.8991	82.9794	539	1	539	6	4	66.6667
hfeng-pmm2	SNP	*	segdup	*	99.6762	99.8147	99.5380	90.2632	28015	52	28009	130	13	10.0000
cchapple-custom	INDEL	I1_5	*	homalt	99.7155	99.8147	99.6166	51.9774	60316	112	59755	230	228	99.1304
ckim-dragen	INDEL	I1_5	HG002complexvar	homalt	99.7432	99.8141	99.6725	52.7072	13423	25	13390	44	44	100.0000
jlack-gatk	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.7214	99.8141	99.6289	46.6996	2148	4	2148	8	7	87.5000
jmaeng-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.0566	99.8141	96.3599	59.7337	3759	7	3759	142	138	97.1831
jmaeng-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.0566	99.8141	96.3599	59.7337	3759	7	3759	142	138	97.1831
bgallagher-sentieon	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	*	99.8449	99.8139	99.8759	69.1925	4828	9	4828	6	5	83.3333
mlin-fermikit	SNP	*	func_cds	homalt	99.5356	99.8137	99.2590	20.0683	6966	13	6966	52	48	92.3077
jlack-gatk	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.0614	99.8136	98.3203	43.6922	10712	20	10712	183	5	2.7322
jlack-gatk	SNP	ti	segdup	homalt	99.8800	99.8135	99.9466	87.6556	7491	14	7491	4	4	100.0000
hfeng-pmm3	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8756	99.8135	99.9378	52.0442	1606	3	1606	1	0	0.0000
hfeng-pmm2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8756	99.8135	99.9378	53.0803	1606	3	1606	1	0	0.0000
jmaeng-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.9067	99.8135	100.0000	43.7478	1606	3	1606	0	0
mlin-fermikit	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.4672	99.8135	97.1567	54.5004	1606	3	1606	47	36	76.5957
raldana-dualsentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.9067	99.8135	100.0000	43.3110	1606	3	1606	0	0
cchapple-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.9067	99.8135	100.0000	43.8707	1606	3	1598	0	0
ndellapenna-hhga	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7349	99.8133	99.6566	54.0176	10159	19	10157	35	30	85.7143
jmaeng-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8830	99.8129	99.9531	76.9081	2134	4	2132	1	1	100.0000
jmaeng-gatk	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	het	99.6261	99.8129	99.4400	42.7465	2134	4	2131	12	2	16.6667
raldana-dualsentieon	SNP	ti	map_siren	homalt	99.8878	99.8127	99.9630	48.3820	37845	71	37839	14	14	100.0000
hfeng-pmm2	SNP	tv	segdup	*	99.6780	99.8125	99.5439	91.3819	8516	16	8512	39	4	10.2564
bgallagher-sentieon	SNP	tv	segdup	*	99.4858	99.8125	99.1612	91.3387	8516	16	8512	72	6	8.3333
jli-custom	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.5785	99.8122	99.3458	67.3382	1063	2	1063	7	7	100.0000

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