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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
10001-10050 / 86044 show all
gduggal-bwafbSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.7052
99.8278
99.5828
48.0230
405874058175
29.4118
jlack-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.7419
99.8278
99.6562
49.2016
405874058140
0.0000
ghariani-varprowlSNPtv*het
98.5275
99.8276
97.2608
33.9264
590670102059087716641154
0.9254
gduggal-snapfbSNPtiHG002compoundhethetalt
97.8831
99.8273
96.0133
26.9417
5781578246
25.0000
ltrigg-rtg1SNPtiHG002compoundhethetalt
99.9136
99.8273
100.0000
20.9016
578157900
rpoplin-dv42SNPtiHG002compoundhethetalt
99.9136
99.8273
100.0000
21.6802
578157800
gduggal-bwafbSNPtiHG002compoundhethetalt
99.9136
99.8273
100.0000
23.3422
578157800
eyeh-varpipeSNPtiHG002compoundhethetalt
99.8980
99.8273
99.9687
18.5958
5781639821
50.0000
ckim-dragenSNPtiHG002compoundhethetalt
99.9136
99.8273
100.0000
21.5739
578157800
bgallagher-sentieonSNP*segduphet
99.2648
99.8268
98.7091
91.1291
1728730172812262
0.8850
dgrover-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.8718
99.8265
99.9171
55.1617
2531544253182116
76.1905
eyeh-varpipeSNPtvmap_l100_m2_e0homalt
99.8474
99.8264
99.8684
67.1566
9198169105124
33.3333
jli-customSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.6032
99.8263
99.3810
56.4884
1782031178211116
5.4054
mlin-fermikitSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
95.2599
99.8263
91.0930
68.6491
344963467339278
82.0059
hfeng-pmm2INDELI1_5*homalt
99.7668
99.8262
99.7075
52.8322
6032310560327177174
98.3051
eyeh-varpipeSNPtvlowcmp_SimpleRepeat_triTR_11to50*
98.8379
99.8261
97.8691
37.1532
344463215707
10.0000
jmaeng-gatkINDELD6_15*homalt
98.8031
99.8261
97.8008
55.3272
6315116315142138
97.1831
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.8006
99.8255
99.7757
49.8187
40047400491
11.1111
jli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.7012
99.8255
99.5772
47.7317
400474004170
0.0000
ltrigg-rtg1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.4357
99.8255
99.0490
49.7611
400474062390
0.0000
ckim-dragenSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.8509
99.8255
99.8764
47.5826
40047403950
0.0000
hfeng-pmm2SNPtimap_l125_m2_e1homalt
99.8298
99.8254
99.8342
68.6316
114382011438199
47.3684
rpoplin-dv42SNPtvHG002complexvarhet
99.8928
99.8249
99.9608
21.2882
1504672641503825946
77.9661
rpoplin-dv42SNP*HG002complexvarhet
99.8978
99.8245
99.9712
18.3215
464680817464534134101
75.3731
ckim-dragenINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.9650
99.8245
98.1202
75.4285
307075430692588582
98.9796
jli-customSNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.8803
99.8245
99.9361
43.9129
625711625743
75.0000
jpowers-varprowlSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
98.4919
99.8244
97.1944
47.1301
39807398411558
50.4348
rpoplin-dv42SNPtiHG002complexvarhet
99.9002
99.8243
99.9761
16.8206
3142135533141527555
73.3333
ghariani-varprowlSNPtiHG002compoundhethomalt
92.9457
99.8242
86.9540
37.0935
73811373851108880
79.4224
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.4485
99.8241
97.1103
48.4061
510895108152151
99.3421
ckim-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.7377
99.8240
97.6748
57.4932
5671105671135133
98.5185
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.8151
99.8240
97.8265
57.8124
5671105671126125
99.2063
bgallagher-sentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.2332
99.8240
96.6922
56.9130
5671105671194193
99.4845
hfeng-pmm2SNPtimap_l125_m2_e0homalt
99.8283
99.8239
99.8327
68.6045
113382011338199
47.3684
jpowers-varprowlSNP*HG002compoundhethomalt
89.3414
99.8238
80.8512
43.1364
10763191077125512008
78.7142
bgallagher-sentieonINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
99.8660
99.8235
99.9086
58.4519
164002916399154
26.6667
ckim-dragenINDEL**homalt
99.2636
99.8234
98.7101
59.5235
12495122112488716321607
98.4681
ndellapenna-hhgaSNPti**
99.8903
99.8233
99.9574
16.8793
208182536862081847888298
33.5586
hfeng-pmm1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.8880
99.8233
99.9528
71.8323
16945301694585
62.5000
hfeng-pmm1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.8880
99.8233
99.9528
71.8323
16945301694585
62.5000
jlack-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50*
99.5118
99.8232
99.2024
37.2444
7342137338595
8.4746
jli-customSNP*lowcmp_SimpleRepeat_triTR_11to50*
99.7622
99.8232
99.7013
32.7459
7342137343223
13.6364
hfeng-pmm1INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9017
99.8231
99.9803
53.8406
10160181016022
100.0000
eyeh-varpipeSNPtvmap_l100_m1_e0homalt
99.8444
99.8231
99.8658
65.0500
9027168931124
33.3333
jlack-gatkSNPtvHG002compoundhethomalt
99.7638
99.8229
99.7048
42.2900
338263377109
90.0000
hfeng-pmm3SNPtvHG002compoundhethomalt
99.8376
99.8229
99.8524
42.5250
33826338255
100.0000
rpoplin-dv42SNPtvHG002compoundhethomalt
99.7491
99.8229
99.6753
42.8668
338263377119
81.8182
egarrison-hhgaSNPti*het
99.8877
99.8228
99.9527
17.2025
12796192272127962260680
13.2013
egarrison-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.8670
99.8227
99.9113
54.5565
11262112611
100.0000
ckim-vqsrINDELI1_5lowcmp_SimpleRepeat_diTR_11to50homalt
99.4700
99.8227
99.1197
72.8749
563156355
100.0000