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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 196 197 198 199 200 201 202 203 204 ... 1720 1721 » 9951-10000 / 86044 show all
dgrover-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.8068	99.8344	99.7793	75.9360	3617	6	3617	8	3	37.5000
eyeh-varpipe	SNP	ti	map_l125_m2_e1	homalt	99.8678	99.8342	99.9015	70.5782	11439	19	11154	11	6	54.5455
ltrigg-rtg1	SNP	ti	HG002complexvar	homalt	99.9028	99.8341	99.9715	18.2456	193142	321	193049	55	54	98.1818
ckim-dragen	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	het	99.6905	99.8338	99.5476	42.3216	11414	19	11441	52	4	7.6923
dgrover-gatk	SNP	ti	segdup	het	99.5358	99.8337	99.2397	90.9955	12010	20	12008	92	3	3.2609
hfeng-pmm3	SNP	*	map_l100_m1_e0	homalt	99.8518	99.8334	99.8703	60.8633	26958	45	26958	35	17	48.5714
rpoplin-dv42	SNP	*	HG002compoundhet	homalt	99.7682	99.8331	99.7035	35.1268	10764	18	10759	32	29	90.6250
ghariani-varprowl	SNP	*	HG002compoundhet	homalt	89.8311	99.8331	81.6508	42.6198	10764	18	10773	2421	2004	82.7757
eyeh-varpipe	SNP	ti	map_l100_m0_e0	homalt	99.8506	99.8328	99.8684	64.9624	7761	13	7590	10	5	50.0000
eyeh-varpipe	SNP	ti	map_l125_m2_e0	homalt	99.8667	99.8327	99.9006	70.5235	11339	19	11058	11	6	54.5455
ckim-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.0447	99.8325	98.2692	63.7593	8346	14	8346	147	145	98.6395
ckim-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.0447	99.8325	98.2692	63.7593	8346	14	8346	147	145	98.6395
astatham-gatk	SNP	*	segdup	homalt	99.8696	99.8324	99.9068	88.1147	10725	18	10725	10	10	100.0000
ltrigg-rtg1	SNP	tv	map_siren	homalt	99.8926	99.8318	99.9535	54.5447	17211	29	17205	8	5	62.5000
raldana-dualsentieon	SNP	tv	map_siren	homalt	99.9013	99.8318	99.9710	52.2802	17211	29	17208	5	5	100.0000
astatham-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.9009	99.8317	99.9703	49.2989	10085	17	10085	3	3	100.0000
jli-custom	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8860	99.8316	99.9405	61.6312	10080	17	10080	6	4	66.6667
cchapple-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.6381	99.8312	97.4731	45.6429	2366	4	2353	61	61	100.0000
hfeng-pmm2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.4745	99.8312	99.1202	49.1587	2366	4	2366	21	20	95.2381
ckim-vqsr	INDEL	I1_5	*	homalt	99.7099	99.8312	99.5890	55.2277	60326	102	60332	249	247	99.1968
cchapple-custom	SNP	ti	segdup	*	99.6040	99.8311	99.3779	91.2552	19504	33	19490	122	16	13.1148
hfeng-pmm3	SNP	ti	segdup	*	99.7137	99.8311	99.5965	88.9183	19504	33	19502	79	3	3.7975
eyeh-varpipe	SNP	ti	map_l150_m2_e1	homalt	99.8689	99.8310	99.9067	75.1753	7680	13	7499	7	5	71.4286
cchapple-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.6621	99.8310	99.4938	54.7565	2954	5	2948	15	1	6.6667
ckim-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8578	99.8307	99.8849	56.2250	14745	25	14747	17	4	23.5294
jmaeng-gatk	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.4228	99.8304	99.0185	72.8574	3531	6	3531	35	34	97.1429
raldana-dualsentieon	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.3948	99.8304	98.9630	72.1359	3531	6	3531	37	37	100.0000
qzeng-custom	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.5189	99.8302	99.2095	64.3231	1764	3	1757	14	7	50.0000
ltrigg-rtg2	SNP	*	func_cds	het	99.5132	99.8298	99.1986	22.7101	11142	19	11141	90	1	1.1111
eyeh-varpipe	SNP	tv	segdup	het	95.3870	99.8298	91.3228	92.1659	5278	9	5178	492	4	0.8130
rpoplin-dv42	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	het	99.8719	99.8294	99.9145	39.6596	4681	8	4676	4	1	25.0000
mlin-fermikit	SNP	ti	func_cds	homalt	99.5745	99.8294	99.3210	18.8179	5266	9	5266	36	34	94.4444
jlack-gatk	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	het	95.6256	99.8294	91.7615	43.4184	4681	8	4678	420	1	0.2381
eyeh-varpipe	SNP	ti	map_l150_m2_e0	homalt	99.8676	99.8293	99.9058	75.1080	7603	13	7426	7	5	71.4286
ndellapenna-hhga	SNP	*	HG002complexvar	homalt	99.8626	99.8292	99.8960	19.9404	288081	493	288110	300	268	89.3333
cchapple-custom	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8504	99.8290	99.8718	59.4899	7007	12	7011	9	6	66.6667
hfeng-pmm2	INDEL	D6_15	HG002complexvar	homalt	99.4885	99.8289	99.1504	61.5359	1167	2	1167	10	9	90.0000
jmaeng-gatk	INDEL	D6_15	HG002complexvar	homalt	99.3614	99.8289	98.8983	63.0673	1167	2	1167	13	12	92.3077
dgrover-gatk	SNP	ti	HG002compoundhet	*	99.8369	99.8284	99.8455	35.6925	17448	30	17446	27	21	77.7778
dgrover-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.8773	99.8283	99.9264	44.0264	4070	7	4073	3	1	33.3333
bgallagher-sentieon	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.8773	99.8283	99.9264	43.4517	4070	7	4073	3	1	33.3333
ltrigg-rtg1	SNP	ti	*	hetalt	99.0637	99.8282	98.3108	41.4441	581	1	582	10	10	100.0000
rpoplin-dv42	SNP	ti	*	hetalt	99.4012	99.8282	98.9779	50.2542	581	1	581	6	6	100.0000
eyeh-varpipe	SNP	ti	*	hetalt	99.5363	99.8282	99.2460	38.4448	581	1	6450	49	47	95.9184
gduggal-bwafb	SNP	ti	*	hetalt	99.7425	99.8282	99.6569	53.0218	581	1	581	2	2	100.0000
ckim-dragen	SNP	ti	*	hetalt	99.1507	99.8282	98.4823	48.3899	581	1	584	9	9	100.0000
gduggal-snapfb	SNP	ti	*	hetalt	78.4605	99.8282	64.6274	61.2500	581	1	581	318	23	7.2327
qzeng-custom	SNP	*	func_cds	homalt	99.8779	99.8281	99.9278	20.5349	6967	12	6918	5	3	60.0000
eyeh-varpipe	SNP	ti	map_l125_m1_e0	homalt	99.8628	99.8280	99.8977	68.2342	11026	19	10743	11	6	54.5455
eyeh-varpipe	SNP	tv	map_l100_m2_e1	homalt	99.8487	99.8280	99.8695	67.1866	9286	16	9182	12	4	33.3333

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