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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 195 196 197 198 199 200 201 202 203 ... 1720 1721 » 9901-9950 / 86044 show all
ckim-dragen	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.6285	99.8409	99.4171	72.8645	1883	3	1876	11	8	72.7273
hfeng-pmm3	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8145	99.8409	99.7880	71.0316	1883	3	1883	4	2	50.0000
hfeng-pmm1	SNP	*	map_l100_m1_e0	homalt	99.8556	99.8408	99.8703	60.9594	26960	43	26960	35	17	48.5714
raldana-dualsentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	97.9932	99.8407	96.2129	58.2077	3760	6	3760	148	145	97.9730
raldana-dualsentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	97.9932	99.8407	96.2129	58.2077	3760	6	3760	148	145	97.9730
hfeng-pmm1	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8937	99.8407	99.9468	55.7785	11278	18	11278	6	6	100.0000
rpoplin-dv42	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.8491	99.8406	99.8576	65.2848	17540	28	17527	25	17	68.0000
ndellapenna-hhga	SNP	ti	HG002complexvar	homalt	99.8705	99.8403	99.9007	18.4130	193154	309	193175	192	171	89.0625
ckim-dragen	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.3951	99.8402	98.9540	76.8921	21864	35	21853	231	230	99.5671
ckim-dragen	SNP	ti	segdup	homalt	99.9000	99.8401	99.9600	86.9440	7493	12	7493	3	3	100.0000
jli-custom	SNP	*	segdup	*	99.5966	99.8397	99.3547	89.2512	28022	45	28022	182	12	6.5934
dgrover-gatk	SNP	*	segdup	*	99.6727	99.8397	99.5063	90.5121	28022	45	28016	139	12	8.6331
jlack-gatk	INDEL	D1_5	HG002complexvar	homalt	99.8161	99.8396	99.7926	59.1577	10581	17	10588	22	21	95.4545
hfeng-pmm2	INDEL	D1_5	HG002complexvar	homalt	99.8773	99.8396	99.9150	58.5881	10581	17	10585	9	7	77.7778
eyeh-varpipe	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	96.0835	99.8396	92.5998	68.1347	2490	4	2365	189	7	3.7037
ltrigg-rtg1	SNP	*	func_cds	het	99.4644	99.8387	99.0928	23.2229	11143	18	11142	102	1	0.9804
dgrover-gatk	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	99.8385	99.8386	99.8385	31.8944	2474	4	2473	4	0	0.0000
ckim-gatk	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	99.8184	99.8386	99.7982	36.6402	2474	4	2473	5	1	20.0000
cchapple-custom	INDEL	D1_5	*	homalt	99.7503	99.8385	99.6622	57.7109	48847	79	48389	164	151	92.0732
hfeng-pmm1	SNP	ti	map_l100_m1_e0	homalt	99.8580	99.8385	99.8775	60.1505	17931	29	17931	22	12	54.5455
eyeh-varpipe	SNP	*	segdup	het	97.2199	99.8383	94.7354	91.1282	17289	28	16861	937	7	0.7471
jmaeng-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.8060	99.8383	99.7738	56.4379	6174	10	6174	14	1	7.1429
ltrigg-rtg1	SNP	*	HG002complexvar	homalt	99.9052	99.8382	99.9722	19.7176	288107	467	288052	80	73	91.2500
hfeng-pmm3	SNP	*	map_l100_m2_e1	homalt	99.8561	99.8381	99.8740	63.2761	27751	45	27751	35	17	48.5714
rpoplin-dv42	SNP	ti	HG002compoundhet	homalt	99.7770	99.8377	99.7163	30.8389	7382	12	7382	21	20	95.2381
hfeng-pmm1	INDEL	*	HG002complexvar	homalt	99.7782	99.8372	99.7192	55.9241	26983	44	26991	76	70	92.1053
ckim-dragen	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.7896	99.8368	99.7424	34.4616	7343	12	7358	19	8	42.1053
rpoplin-dv42	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8787	99.8366	99.9207	56.8327	20166	33	20166	16	7	43.7500
egarrison-hhga	SNP	*	*	*	99.8985	99.8365	99.9607	18.3304	3049624	4995	3049677	1199	305	25.4379
hfeng-pmm3	SNP	*	map_l100_m2_e0	homalt	99.8546	99.8365	99.8728	63.2901	27478	45	27478	35	17	48.5714
jlack-gatk	INDEL	I1_5	HG002complexvar	homalt	99.7623	99.8364	99.6883	53.0964	13426	22	13432	42	40	95.2381
hfeng-pmm3	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.8636	99.8363	99.8908	48.6619	3660	6	3660	4	4	100.0000
jli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7542	99.8360	99.6725	49.7429	2435	4	2435	8	0	0.0000
dgrover-gatk	SNP	tv	segdup	*	99.6606	99.8359	99.4859	91.6354	8518	14	8514	44	6	13.6364
hfeng-pmm3	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8197	99.8356	99.8037	72.1124	21863	36	21863	43	42	97.6744
jlack-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.4496	99.8356	99.0666	73.6565	21863	36	21863	206	205	99.5146
ltrigg-rtg2	SNP	ti	func_cds	het	99.6069	99.8354	99.3795	21.1847	8490	14	8489	53	1	1.8868
hfeng-pmm1	INDEL	I6_15	HG002complexvar	homalt	98.6168	99.8353	97.4277	55.0578	1212	2	1212	32	32	100.0000
jli-custom	INDEL	I6_15	HG002complexvar	homalt	99.0196	99.8353	98.2172	53.8692	1212	2	1212	22	22	100.0000
hfeng-pmm3	INDEL	I6_15	HG002complexvar	homalt	98.6971	99.8353	97.5845	54.9183	1212	2	1212	30	30	100.0000
hfeng-pmm2	INDEL	I6_15	HG002complexvar	homalt	98.4965	99.8353	97.1933	55.2244	1212	2	1212	35	35	100.0000
hfeng-pmm2	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.4932	99.8351	99.1537	57.8723	3632	6	3632	31	29	93.5484
egarrison-hhga	SNP	*	HG002complexvar	homalt	99.8875	99.8351	99.9400	19.8887	288098	476	288126	173	140	80.9249
gduggal-bwafb	SNP	ti	HG002complexvar	homalt	99.8904	99.8351	99.9457	18.2578	193145	319	193159	105	88	83.8095
eyeh-varpipe	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7641	99.8350	99.6932	57.1024	10893	18	10724	33	14	42.4242
hfeng-pmm1	INDEL	I1_5	map_siren	homalt	99.6300	99.8350	99.4258	77.3924	1210	2	1212	7	4	57.1429
jli-custom	INDEL	I1_5	map_siren	homalt	99.6709	99.8350	99.5074	76.9711	1210	2	1212	6	3	50.0000
jlack-gatk	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	*	98.2808	99.8350	96.7742	42.6049	18153	30	18150	605	8	1.3223
bgallagher-sentieon	INDEL	I1_5	map_siren	homalt	99.6711	99.8350	99.5078	78.1149	1210	2	1213	6	4	66.6667
astatham-gatk	INDEL	I1_5	map_siren	homalt	99.6711	99.8350	99.5078	78.3135	1210	2	1213	6	4	66.6667

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