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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
9851-9900 / 86044 show all
jlack-gatkSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.9237
99.8474
100.0000
34.0222
13092130900
raldana-dualsentieonSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.9237
99.8474
100.0000
34.6480
13092130900
rpoplin-dv42SNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.8633
99.8472
99.8795
59.6020
5554685555306738
56.7164
ltrigg-rtg1SNPtifunc_cdshet
99.6011
99.8471
99.3563
21.6630
8491138490551
1.8182
jli-customINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.2668
99.8469
96.7359
71.1719
65216522222
100.0000
hfeng-pmm2INDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.5639
99.8469
97.3134
72.4846
65216521817
94.4444
hfeng-pmm2INDELD1_5*homalt
99.8457
99.8467
99.8447
59.0004
4885175488557674
97.3684
jlack-gatkSNP*lowcmp_SimpleRepeat_homopolymer_6to10het
99.7791
99.8466
99.7116
58.4535
110671711063323
9.3750
ltrigg-rtg1SNPtv*het
99.7418
99.8465
99.6372
20.0234
590796908591027215250
2.3234
ltrigg-rtg1SNPtvHG002complexvarhomalt
99.9101
99.8465
99.9737
22.5425
94965146950032519
76.0000
jli-customINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
99.1609
99.8464
98.4848
39.5973
1950319503030
100.0000
rpoplin-dv42SNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.8658
99.8462
99.8855
53.8968
2791643279133219
59.3750
bgallagher-sentieonINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.8817
99.8462
99.9171
55.0271
2532039253232116
76.1905
rpoplin-dv42SNPtvsegduphomalt
99.7378
99.8456
99.6302
90.4939
3233532331212
100.0000
ghariani-varprowlSNPtvsegduphomalt
99.0657
99.8456
98.2979
91.0501
3233532345629
51.7857
hfeng-pmm1SNP*map_l100_m2_e1homalt
99.8597
99.8453
99.8740
63.3660
2775343277533517
48.5714
hfeng-pmm1SNPtvmap_l100_m1_e0homalt
99.8507
99.8452
99.8562
62.4720
9029149029135
38.4615
raldana-dualsentieonSNPtv*het
99.8532
99.8447
99.8617
22.1748
59077791959070381822
2.6895
rpoplin-dv42SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.8590
99.8446
99.8734
64.1005
2763543276223519
54.2857
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.3106
99.8446
98.7824
50.8940
8353138356103101
98.0583
jmaeng-gatkINDELI1_5*homalt
99.7149
99.8444
99.5857
55.4032
603349460340251245
97.6096
hfeng-pmm1SNP*map_l100_m2_e0homalt
99.8583
99.8438
99.8728
63.3749
2748043274803517
48.5714
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.6293
99.8437
97.4442
51.1779
510985109134133
99.2537
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.6674
99.8437
97.5186
50.9181
510985109130129
99.2308
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_homopolymer_6to10het
99.9002
99.8433
99.9572
60.4236
700811700432
66.6667
hfeng-pmm1SNPtimap_l100_m2_e1homalt
99.8621
99.8432
99.8810
62.5754
1846529184652212
54.5455
bgallagher-sentieonSNP*segdup*
99.5028
99.8432
99.1647
90.1877
28023442801723612
5.0848
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6469
99.8428
99.4518
50.2823
254042540140
0.0000
raldana-dualsentieonINDELI1_5*homalt
99.6902
99.8428
99.5381
54.0742
603339560337280279
99.6429
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6078
99.8428
99.3740
51.5542
254042540161
6.2500
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6469
99.8428
99.4518
52.6335
254042540142
14.2857
jlack-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9066
99.8428
99.9705
54.1001
10162161016233
100.0000
jlack-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.4518
99.8428
99.0640
53.5675
254042540240
0.0000
ltrigg-rtg1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.1721
99.8428
98.5103
52.2176
254042579390
0.0000
ckim-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6078
99.8428
99.3740
52.6140
254042540162
12.5000
ckim-gatkINDELI1_5*homalt
99.7125
99.8428
99.5825
55.2232
603339560339253249
98.4190
ckim-dragenSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.8239
99.8428
99.8051
49.9512
25404256050
0.0000
ckim-dragenSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.7964
99.8426
99.7503
54.7629
2791544279637023
32.8571
rpoplin-dv42SNP*lowcmp_SimpleRepeat_quadTR_11to50het
99.8687
99.8426
99.8949
39.6597
114151811408123
25.0000
eyeh-varpipeSNPtisegduphet
97.9291
99.8421
96.0882
90.6738
1201119118154813
0.6237
jlack-gatkSNP*segduphomalt
99.8743
99.8418
99.9069
88.3916
1072617107261010
100.0000
hfeng-pmm1SNPtimap_l100_m2_e0homalt
99.8607
99.8416
99.8798
62.5925
1828029182802212
54.5455
ckim-dragenSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8935
99.8416
99.9455
56.0535
2016732201781111
100.0000
ckim-dragenSNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.7675
99.8416
99.6935
39.2563
107151710732334
12.1212
cchapple-customSNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.6239
99.8416
99.4072
41.3357
107151710732647
10.9375
jlack-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8910
99.8415
99.9405
60.8743
10081161008166
100.0000
dgrover-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9009
99.8415
99.9603
61.7282
10081161008144
100.0000
dgrover-gatkSNPtisegdup*
99.6780
99.8413
99.5153
89.9275
195063119504956
6.3158
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_diTR_11to50het
99.8570
99.8412
99.8729
71.3127
31435314343
75.0000
ltrigg-rtg2SNPtv*het
99.7405
99.8410
99.6402
19.4900
590763941590991213460
2.8116