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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
9801-9850 / 86044 show all
ckim-dragenSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.8169
99.8526
99.7812
60.4097
55549825563112239
31.9672
hfeng-pmm3SNPtimap_l100_m2_e0homalt
99.8662
99.8525
99.8798
62.5049
1828227182822212
54.5455
jpowers-varprowlSNPtvHG002compoundhethomalt
83.3558
99.8524
71.5372
51.1753
33835338813481126
83.5312
jli-customSNPtvlowcmp_SimpleRepeat_quadTR_11to50*
98.6800
99.8524
97.5347
38.6336
74411174381883
1.5957
astatham-gatkSNPtvHG002compoundhethomalt
99.8376
99.8524
99.8227
42.7314
33835337865
83.3333
ghariani-varprowlSNPtvHG002compoundhethomalt
83.7163
99.8524
72.0698
50.4793
33835338813131124
85.6055
gduggal-bwafbSNPtv*homalt
99.9109
99.8520
99.9697
21.5631
37656555837657911464
56.1404
rpoplin-dv42SNPtilowcmp_SimpleRepeat_quadTR_11to50het
99.8665
99.8517
99.8813
39.6598
673410673282
25.0000
dgrover-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50het
99.3508
99.8517
98.8550
44.7482
6734106734781
1.2821
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_quadTR_11to50het
99.1461
99.8517
98.4503
43.0996
67341067341061
0.9434
astatham-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9258
99.8517
100.0000
35.0718
673510673500
jpowers-varprowlSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
98.3156
99.8517
96.8261
47.4887
6735106742221131
59.2760
jlack-gatkSNP*HG002compoundhethomalt
99.8516
99.8516
99.8515
34.5857
1076616107611615
93.7500
hfeng-pmm1SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9059
99.8514
99.9603
61.6429
10082151008244
100.0000
bgallagher-sentieonSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9009
99.8514
99.9504
61.6260
10082151008255
100.0000
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_quadTR_11to50het
98.6516
99.8513
97.4804
41.9937
1141617114132952
0.6780
ghariani-varprowlSNP*func_cds*
99.5441
99.8512
99.2389
30.8362
18123271812313914
10.0719
eyeh-varpipeSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
94.0198
99.8511
88.8320
71.0242
2682426013276
1.8349
bgallagher-sentieonINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.8950
99.8510
99.9390
54.8240
14748221475094
44.4444
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_11to50het
97.9485
99.8507
96.1175
40.3651
4682746791891
0.5291
jli-customSNPtvlowcmp_SimpleRepeat_quadTR_11to50het
97.9793
99.8507
96.1768
39.7598
4682746791861
0.5376
jli-customSNPtisegduphet
99.4165
99.8504
98.9864
89.3080
1201218120121232
1.6260
ckim-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.7261
99.8504
99.6021
49.5356
400564005162
12.5000
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.7261
99.8504
99.6021
48.7836
400564005161
6.2500
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
94.2388
99.8503
89.2244
68.0061
1334213001574
2.5478
egarrison-hhgaSNPti**
99.9062
99.8498
99.9627
17.0848
208237931322082402778200
25.7069
hfeng-pmm3SNPtimap_l100_m1_e0homalt
99.8636
99.8497
99.8775
60.0521
1793327179332212
54.5455
ltrigg-rtg1INDELD1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.9248
99.8496
100.0000
34.3750
13282132300
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.9248
99.8496
100.0000
41.6849
13282132900
rpoplin-dv42INDELD1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.9248
99.8496
100.0000
40.4484
13282132800
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.9248
99.8496
100.0000
41.9185
13282132600
cchapple-customSNPtvfunc_cdshet
99.2733
99.8495
98.7037
37.1216
265342665350
0.0000
hfeng-pmm1SNPtvmap_l100_m2_e1homalt
99.8549
99.8495
99.8602
64.8422
9288149288135
38.4615
hfeng-pmm2INDEL*HG002complexvarhomalt
99.7542
99.8483
99.6603
56.1296
2698641269949286
93.4783
ciseli-customSNPtifunc_cdshomalt
99.3195
99.8483
98.7963
20.7719
5267852536429
45.3125
hfeng-pmm1SNPtvmap_l100_m2_e0homalt
99.8535
99.8481
99.8589
64.8359
9200149200135
38.4615
egarrison-hhgaSNPtiHG002complexvarhomalt
99.8937
99.8480
99.9395
18.4037
19316929419318811794
80.3419
cchapple-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.7021
99.8478
99.5569
77.2437
656167433
100.0000
jmaeng-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.9238
99.8478
100.0000
80.6261
656165600
ckim-dragenSNPtvsegdup*
98.3491
99.8476
96.8949
93.2025
85191385192736
2.1978
eyeh-varpipeSNPtvsegdup*
97.0429
99.8476
94.3914
91.6933
851913839849911
2.2044
eyeh-varpipeSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
95.3296
99.8474
91.2029
66.5610
39256375336212
3.3149
gduggal-bwafbSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.9237
99.8474
100.0000
38.6097
13092130700
jli-customSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.9237
99.8474
100.0000
34.7458
13092130900
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.9237
99.8474
100.0000
34.5500
13092130900
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
98.7189
99.8474
97.6155
43.1356
130921310320
0.0000
ckim-dragenSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.8231
99.8474
99.7988
56.7435
39256396982
25.0000
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6319
99.8474
99.4174
58.2620
392563925232
8.6957
hfeng-pmm1SNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.9237
99.8474
100.0000
35.1338
13092130900
jlack-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.2666
99.8474
98.6925
59.1977
392563925521
1.9231