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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
9701-9750 / 86044 show all
gduggal-bwafbSNP**homalt
99.9194
99.8626
99.9762
18.5273
117854116211178572280175
62.5000
cchapple-customSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.8854
99.8625
99.9082
58.4392
108961510886106
60.0000
qzeng-customSNPtifunc_cds*
99.7894
99.8622
99.7168
26.7032
137681913732394
10.2564
ltrigg-rtg2SNPtifunc_cds*
99.7392
99.8622
99.6165
20.8703
137681913767531
1.8868
jmaeng-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.8161
99.8620
99.7702
64.9597
21713217150
0.0000
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.7015
99.8620
99.5415
64.0336
217132171100
0.0000
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.7702
99.8620
99.6786
64.4814
21713217170
0.0000
jlack-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.2911
99.8620
98.7267
65.1671
217132171281
3.5714
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.7244
99.8620
99.5872
63.6182
21713217190
0.0000
gduggal-bwafbSNP***
99.7820
99.8619
99.7021
21.9848
3050417421730506569115775
8.5025
ltrigg-rtg1SNPti*het
99.8539
99.8618
99.8460
16.3632
128012317711280140197552
2.6329
ckim-dragenSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.7746
99.8617
99.6878
62.5042
35370493544111128
25.2252
gduggal-bwafbSNP**het
99.6957
99.8616
99.5303
23.9839
1871007259418712158830595
6.7384
rpoplin-dv42SNPtvHG002complexvar*
99.9096
99.8615
99.9577
21.9240
24581134124570210487
83.6538
hfeng-pmm1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.9134
99.8615
99.9653
69.5900
11536161153643
75.0000
hfeng-pmm1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.9134
99.8615
99.9653
69.5900
11536161153643
75.0000
hfeng-pmm3SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9108
99.8613
99.9603
61.0721
10083141008344
100.0000
ckim-dragenSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9158
99.8613
99.9703
61.4918
10083141008533
100.0000
rpoplin-dv42SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8811
99.8613
99.9009
61.7921
100831410083102
20.0000
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
96.2658
99.8611
92.9204
71.7174
1438213651041
0.9615
ckim-dragenSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8269
99.8611
99.7927
69.0150
14382144432
66.6667
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.3038
99.8611
98.7526
69.4861
143821425181
5.5556
raldana-dualsentieonSNP*HG002compoundhethomalt
99.8887
99.8609
99.9165
34.8192
10767151076898
88.8889
ckim-dragenINDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
99.7677
99.8606
99.6750
47.8198
21493214777
100.0000
jli-customSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.7232
99.8605
99.5863
54.2148
2792039279211169
7.7586
hfeng-pmm2SNPtvmap_l100_m2_e1homalt
99.8549
99.8602
99.8495
64.9261
9289139289145
35.7143
dgrover-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.6673
99.8600
99.4754
57.8446
178262517825945
5.3192
ckim-dragenSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.7569
99.8600
99.6542
57.5039
1782625178656215
24.1935
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.8949
99.8598
99.9299
27.9657
14252142610
0.0000
ckim-dragenSNPtvlowcmp_SimpleRepeat_triTR_11to50het
99.6745
99.8597
99.4900
40.5130
213532146114
36.3636
ckim-dragenINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.7661
99.8597
99.6727
76.2860
21353213271
14.2857
eyeh-varpipeSNP*map_l100_m2_e1homalt
99.8719
99.8597
99.8841
65.3160
2775739267183116
51.6129
eyeh-varpipeSNPtvlowcmp_SimpleRepeat_triTR_11to50het
98.2187
99.8597
96.6309
38.9931
213531979696
8.6957
gduggal-bwafbSNPtvlowcmp_SimpleRepeat_triTR_11to50het
99.2813
99.8597
98.7097
43.7241
213532142283
10.7143
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.8362
99.8597
99.8128
76.4258
21353213341
25.0000
hfeng-pmm3INDEL*HG002complexvarhomalt
99.7967
99.8594
99.7340
55.8371
2698938269997266
91.6667
bgallagher-sentieonINDELI1_5*homalt
99.6433
99.8593
99.4283
55.0054
603438560348347343
98.8473
dgrover-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.5765
99.8591
99.2956
64.7620
27639392762919619
9.6939
ckim-dragenSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.8358
99.8591
99.8124
64.8592
2763939276735216
30.7692
hfeng-pmm2SNPtvmap_l100_m2_e0homalt
99.8535
99.8589
99.8481
64.9206
9201139201145
35.7143
qzeng-customSNPtifunc_cdshet
99.7296
99.8589
99.6007
30.7386
8492128481341
2.9412
bgallagher-sentieonSNPtisegduphet
99.2686
99.8587
98.6854
90.5804
1201317120111602
1.2500
astatham-gatkINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.4789
99.8586
99.1021
72.7252
3532535323232
100.0000
jli-customINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.5913
99.8586
99.3255
71.8824
3532535342424
100.0000
ckim-vqsrINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.5070
99.8586
99.1578
72.7530
3532535323030
100.0000
ckim-vqsrINDELD1_5HG002complexvarhomalt
99.8538
99.8585
99.8491
60.1802
1058315105901614
87.5000
jlack-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8937
99.8584
99.9291
56.1359
11280161128087
87.5000
eyeh-varpipeSNP*map_l100_m2_e0homalt
99.8725
99.8583
99.8868
65.3085
2748439264663016
53.3333
ghariani-varprowlSNP**het
99.0974
99.8581
98.3482
28.2380
18709072659187129431430431
1.3713
dgrover-gatkINDELI1_5*homalt
99.7224
99.8577
99.5874
55.4630
603428660347250246
98.4000