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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
9651-9700 / 86044 show all
eyeh-varpipeSNP*lowcmp_SimpleRepeat_triTR_11to50het
98.5435
99.8700
97.2518
40.3648
4610643881249
7.2581
bgallagher-sentieonSNP*segduphomalt
99.8883
99.8697
99.9069
88.1168
1072914107291010
100.0000
rpoplin-dv42SNP*HG002complexvar*
99.9179
99.8694
99.9664
18.9545
753396985753221253214
84.5850
raldana-dualsentieonSNP**het
99.8865
99.8694
99.9036
19.2179
187114124461871016180643
2.3810
jmaeng-gatkINDEL**homalt
99.5485
99.8690
99.2301
59.0290
125008164125021970941
97.0103
dgrover-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50het
98.9125
99.8688
97.9744
43.3648
1141815114152362
0.8475
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.8173
99.8685
97.7879
55.5694
8355118355189186
98.4127
ghariani-varprowlSNP***
99.3496
99.8685
98.8361
25.2137
305057740163051086359302639
7.3448
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.7589
99.8685
97.6736
55.3106
8355118355199195
97.9899
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.1097
99.8684
98.3624
63.9223
8349118349139138
99.2806
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.1097
99.8684
98.3624
63.9223
8349118349139138
99.2806
ckim-dragenSNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.7859
99.8680
99.7039
39.7224
181592418186546
11.1111
jmaeng-gatkINDELD1_5HG002complexvarhomalt
99.8538
99.8679
99.8397
60.1891
1058414105911715
88.2353
jmaeng-gatkSNP*func_cds*
99.4513
99.8678
99.0382
31.9360
1812624181231761
0.5682
ltrigg-rtg2SNP*func_cds*
99.6865
99.8678
99.5059
22.3605
181262418125901
1.1111
ckim-gatkSNP*func_cds*
99.6618
99.8678
99.4567
31.5863
181262418123991
1.0101
ltrigg-rtg2SNP*HG002complexvarhomalt
99.9218
99.8676
99.9761
19.6026
2881923822881186968
98.5507
gduggal-bwafbSNPti*homalt
99.9234
99.8676
99.9793
17.0184
8019761063801993166111
66.8675
qzeng-customSNPtifunc_cdshomalt
99.8860
99.8673
99.9047
18.9998
52687524353
60.0000
dgrover-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.5314
99.8673
99.1977
62.4958
35372473536128620
6.9930
rpoplin-dv42INDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8805
99.8672
99.8937
56.0776
1128115112801212
100.0000
jli-customSNPtisegdup*
99.6094
99.8669
99.3533
88.6519
1951126195111276
4.7244
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9333
99.8668
100.0000
53.2144
22493230700
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9333
99.8668
100.0000
51.4674
22493224900
cchapple-customSNPtisegduphomalt
99.8600
99.8668
99.8533
87.0523
74951074871111
100.0000
raldana-dualsentieonSNPtisegduphomalt
99.9134
99.8668
99.9600
87.2078
749510749533
100.0000
ghariani-varprowlSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.8360
99.8663
95.8865
61.2690
201722720210867535
61.7070
gduggal-bwafbSNPti**
99.8083
99.8659
99.7507
20.3177
2082722279620828585206495
9.5083
jlack-gatkSNPtvlowcmp_SimpleRepeat_quadTR_11to50*
97.1720
99.8658
94.6197
41.0468
74421074394234
0.9456
ckim-vqsrINDEL**homalt
99.5675
99.8658
99.2711
58.9429
125004168125017918901
98.1481
jlack-gatkINDELD1_5*homalt
99.6645
99.8651
99.4647
59.9060
488606648867263260
98.8593
gduggal-bwafbSNPti*het
99.7363
99.8649
99.6080
22.2231
1280165173212802845038382
7.5824
jlack-gatkSNPtiHG002compoundhethomalt
99.8918
99.8648
99.9188
30.3225
738410738466
100.0000
jli-customINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
99.4474
99.8648
99.0334
44.0841
10343141034810198
97.0297
ckim-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
99.0282
99.8648
98.2055
45.9010
103431410343189184
97.3545
cchapple-customSNP*lowcmp_SimpleRepeat_homopolymer_6to10het
99.8601
99.8647
99.8556
55.3095
110691511065167
43.7500
ltrigg-rtg2SNPti*het
99.8504
99.8647
99.8361
15.7716
128015917351280167210175
3.5697
astatham-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8864
99.8637
99.9091
41.9065
21983219822
100.0000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9318
99.8637
100.0000
42.6858
21983219800
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7261
99.8636
99.5890
49.1643
14642145463
50.0000
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9317
99.8636
100.0000
40.1819
14642144700
ckim-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9317
99.8636
100.0000
43.0793
14642146400
hfeng-pmm2INDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.8228
99.8636
99.7820
48.9282
36615366188
100.0000
hfeng-pmm3SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9317
99.8636
100.0000
45.3935
14642146400
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9317
99.8636
100.0000
43.1014
14642146400
bgallagher-sentieonSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.2725
99.8634
98.6886
65.8031
17544241753423315
6.4378
ckim-dragenSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.7926
99.8634
99.7220
66.5121
1754424175764913
26.5306
ckim-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.6391
99.8632
97.4447
51.1732
511075110134133
99.2537
bgallagher-sentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.0712
99.8632
96.3424
50.4716
511075110194193
99.4845
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.7153
99.8632
97.5936
51.6484
511075110126125
99.2063