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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
9601-9650 / 86044 show all
dgrover-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.6743
99.8742
99.4753
60.5238
55561705555029327
9.2150
hfeng-pmm2SNP*map_l100_m2_e1homalt
99.8687
99.8741
99.8633
63.3911
2776135277613819
50.0000
ltrigg-rtg2SNPtiHG002complexvarhomalt
99.9240
99.8739
99.9741
18.1301
1932192441931175049
98.0000
jmaeng-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.9267
99.8738
97.9975
50.0103
4747647479796
98.9691
raldana-dualsentieonINDEL**homalt
99.5287
99.8738
99.1860
57.6626
12501415812502310261009
98.3431
hfeng-pmm3SNPtv*het
99.9161
99.8738
99.9586
21.3235
59094974759087524512
4.8980
jli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.4971
99.8738
99.1234
45.0258
4747647494240
95.2381
egarrison-hhgaSNPtv*homalt
99.9252
99.8738
99.9766
20.9039
3766474763766568860
68.1818
rpoplin-dv42SNP*lowcmp_SimpleRepeat_homopolymer_6to10het
99.9097
99.8737
99.9458
56.0006
11070141106665
83.3333
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.0155
99.8736
96.2253
56.0241
316143161124122
98.3871
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.0003
99.8736
96.1960
56.0166
316143161125123
98.4000
hfeng-pmm3INDELI1_5HG002complexvarhomalt
99.8699
99.8736
99.8662
51.8330
1343117134361816
88.8889
hfeng-pmm1INDELI1_5HG002complexvarhomalt
99.8625
99.8736
99.8514
52.0252
1343117134352017
85.0000
ckim-gatkINDELD6_15*homalt
98.8810
99.8735
97.9079
55.6525
631886318135132
97.7778
raldana-dualsentieonINDELD6_15*homalt
98.7805
99.8735
97.7111
54.0245
631886318148145
97.9730
ckim-vqsrINDELD6_15*homalt
98.8887
99.8735
97.9231
55.6564
631886318134131
97.7612
dgrover-gatkINDELD6_15*homalt
98.8732
99.8735
97.8928
55.5601
631886318136134
98.5294
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.8418
99.8734
99.8102
55.3516
15782157830
0.0000
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.4692
99.8734
99.0683
51.6226
157821595150
0.0000
eyeh-varpipeSNPtimap_sirenhomalt
99.8945
99.8734
99.9157
53.2558
3786848367233117
54.8387
asubramanian-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.7788
99.8734
99.6843
54.0070
15782157950
0.0000
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.7466
99.8734
99.6200
55.6834
15782157361
16.6667
rpoplin-dv42SNPtiHG002complexvar*
99.9216
99.8731
99.9701
17.4429
507791645507725152130
85.5263
ltrigg-rtg2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9363
99.8728
100.0000
62.0276
785182400
jmaeng-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9363
99.8728
100.0000
62.5298
785178500
jpowers-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
98.6230
99.8728
97.4042
72.7150
78517882113
61.9048
ghariani-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
98.4998
99.8728
97.1640
70.8797
78517882313
56.5217
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9363
99.8728
100.0000
61.9302
785178500
hfeng-pmm2SNP*map_l100_m2_e0homalt
99.8674
99.8728
99.8619
63.3992
2748835274883819
50.0000
jlack-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9363
99.8728
100.0000
62.3140
785178500
hfeng-pmm3SNPtvmap_sirenhomalt
99.8898
99.8724
99.9071
55.8869
172182217215168
50.0000
ndellapenna-hhgaSNPtv*homalt
99.9152
99.8722
99.9583
20.9089
376641482376648157123
78.3439
ghariani-varprowlSNPti*het
99.3626
99.8721
98.8582
25.2183
12802371639128041714789277
1.8730
dgrover-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.8720
99.8720
99.8720
30.2429
39015390051
20.0000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_triTR_11to50*
99.8976
99.8720
99.9231
28.9976
39015390032
66.6667
ckim-dragenSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.8338
99.8720
99.7956
30.8168
39015390584
50.0000
eyeh-varpipeSNPtimap_l100_m1_e0homalt
99.8788
99.8719
99.8856
62.1452
1793723174642012
60.0000
dgrover-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10het
99.9073
99.8718
99.9429
60.7832
70109700643
75.0000
bgallagher-sentieonINDELI6_15*homalt
97.0258
99.8718
94.3376
54.5892
623186231374371
99.1979
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.9221
99.8717
99.9725
60.1200
10897141089332
66.6667
jlack-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8960
99.8713
99.9208
48.6105
10089131008987
87.5000
rpoplin-dv42SNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.8628
99.8712
99.8543
55.6453
1782823178252614
53.8462
jlack-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.8061
99.8706
99.7416
78.4940
772177220
0.0000
jlack-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.5086
99.8706
99.1491
56.7671
617686176532
3.7736
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.7497
99.8706
99.6290
54.7353
617686176230
0.0000
ckim-vqsrINDEL*HG002complexvarhomalt
99.7470
99.8705
99.6237
57.3434
26992352700510298
96.0784
hfeng-pmm2SNP*map_l100_m1_e0homalt
99.8648
99.8704
99.8593
60.9853
2696835269683819
50.0000
cchapple-customSNPtv*het
99.6701
99.8702
99.4708
26.9512
5909287685915533147233
7.4039
astatham-gatkSNP*HG002compoundhethomalt
99.8748
99.8702
99.8794
34.8528
1076814107631312
92.3077
bgallagher-sentieonSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.4306
99.8701
98.9950
61.8984
35373463536235920
5.5710