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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 186 187 188 189 190 191 192 193 194 ... 1720 1721 » 9451-9500 / 86044 show all
bgallagher-sentieon	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.1348	99.8900	98.3909	39.6771	18163	20	18160	297	4	1.3468
ltrigg-rtg1	SNP	*	func_cds	*	99.6647	99.8898	99.4405	22.8252	18130	20	18129	102	1	0.9804
hfeng-pmm1	SNP	tv	map_siren	homalt	99.8956	99.8898	99.9014	56.0205	17221	19	17219	17	8	47.0588
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.2664	99.8896	98.6509	37.0615	7239	8	7239	99	98	98.9899
cchapple-custom	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8835	99.8894	99.8776	53.9498	17158	19	17135	21	9	42.8571
bgallagher-sentieon	INDEL	D6_15	*	homalt	98.4421	99.8893	97.0362	55.3606	6319	7	6319	193	190	98.4456
astatham-gatk	INDEL	D6_15	*	homalt	98.8889	99.8893	97.9083	55.4989	6319	7	6319	135	133	98.5185
ndellapenna-hhga	SNP	ti	*	homalt	99.9286	99.8893	99.9678	16.7330	802149	889	802170	258	209	81.0078
hfeng-pmm3	SNP	ti	map_siren	homalt	99.9129	99.8892	99.9367	51.9265	37874	42	37868	24	14	58.3333
ckim-gatk	INDEL	*	HG002complexvar	homalt	99.7525	99.8890	99.6164	57.3371	26997	30	27010	104	99	95.1923
hfeng-pmm3	SNP	*	HG002compoundhet	homalt	99.8980	99.8887	99.9072	34.7339	10770	12	10770	10	10	100.0000
hfeng-pmm2	SNP	*	HG002compoundhet	homalt	99.8887	99.8887	99.8887	35.3481	10770	12	10770	12	11	91.6667
jli-custom	SNP	*	HG002compoundhet	homalt	99.8794	99.8887	99.8702	35.2217	10770	12	10769	14	12	85.7143
hfeng-pmm2	INDEL	I1_5	HG002complexvar	homalt	99.8477	99.8885	99.8069	52.0702	13433	15	13437	26	25	96.1538
jlack-gatk	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8087	99.8883	99.7292	46.8642	6261	7	6261	17	3	17.6471
eyeh-varpipe	SNP	tv	HG002complexvar	*	99.7847	99.8883	99.6813	20.5762	245880	275	235205	752	120	15.9574
ndellapenna-hhga	SNP	*	segdup	homalt	99.7258	99.8883	99.5639	88.9154	10731	12	10731	47	47	100.0000
rpoplin-dv42	SNP	*	segdup	homalt	99.8140	99.8883	99.7398	89.1939	10731	12	10731	28	28	100.0000
raldana-dualsentieon	SNP	*	segdup	homalt	99.9022	99.8883	99.9162	87.9114	10731	12	10731	9	9	100.0000
eyeh-varpipe	SNP	ti	segdup	*	98.6842	99.8874	97.5096	89.9888	19515	22	19225	491	13	2.6477
astatham-gatk	INDEL	*	*	homalt	99.5755	99.8874	99.2657	58.8575	125031	141	125041	925	908	98.1622
egarrison-hhga	SNP	*	*	homalt	99.9329	99.8872	99.9785	18.1960	1178830	1331	1178859	253	173	68.3794
jmaeng-gatk	SNP	tv	func_cds	het	98.8082	99.8871	97.7524	44.9828	2654	3	2653	61	0	0.0000
ckim-gatk	SNP	tv	func_cds	het	99.4192	99.8871	98.9556	44.4352	2654	3	2653	28	0	0.0000
ckim-gatk	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5071	99.8869	99.1302	72.7419	3533	4	3533	31	31	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5071	99.8869	99.1302	72.8167	3533	4	3533	31	31	100.0000
bgallagher-sentieon	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.2834	99.8869	98.6872	72.6216	3533	4	3533	47	47	100.0000
cchapple-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.6597	99.8868	99.4337	56.4666	6177	7	6145	35	2	5.7143
mlin-fermikit	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	96.2297	99.8868	92.8310	67.6868	1765	2	1774	137	123	89.7810
cchapple-custom	SNP	ti	*	*	99.8773	99.8866	99.8679	19.3368	2083147	2364	2081936	2754	477	17.3203
ltrigg-rtg1	SNP	tv	*	*	99.8285	99.8863	99.7709	19.9654	968593	1103	968859	2225	103	4.6292
bgallagher-sentieon	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.9002	99.8860	99.9144	60.6431	7011	8	7007	6	3	50.0000
eyeh-varpipe	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7540	99.8860	99.6224	56.8960	7011	8	6859	26	11	42.3077
jli-custom	SNP	*	HG002complexvar	het	99.9263	99.8859	99.9667	18.4399	464966	531	464872	155	54	34.8387
ltrigg-rtg1	SNP	tv	func_cds	*	99.4080	99.8856	98.9350	27.2263	4366	5	4366	47	0	0.0000
ltrigg-rtg2	SNP	tv	func_cds	*	99.5213	99.8856	99.1597	26.7631	4366	5	4366	37	0	0.0000
jlack-gatk	SNP	*	HG002complexvar	het	99.8914	99.8855	99.8973	19.1615	464964	533	464834	478	152	31.7992
dgrover-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.7696	99.8855	99.6539	55.1919	27927	32	27926	97	8	8.2474
hfeng-pmm2	SNP	*	*	het	99.9111	99.8854	99.9369	19.2150	1871439	2148	1871315	1181	42	3.5563
eyeh-varpipe	SNP	*	*	hetalt	99.5795	99.8852	99.2757	41.9596	870	1	7539	55	52	94.5455
eyeh-varpipe	SNP	tv	*	hetalt	99.3621	99.8852	98.8445	45.4641	870	1	4106	48	46	95.8333
rpoplin-dv42	SNP	*	*	hetalt	99.4854	99.8852	99.0888	49.8858	870	1	870	8	8	100.0000
rpoplin-dv42	SNP	tv	*	hetalt	99.4854	99.8852	99.0888	49.8858	870	1	870	8	8	100.0000
jli-custom	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.8026	99.8847	99.7206	56.2796	6065	7	6068	17	17	100.0000
cchapple-custom	SNP	tv	*	homalt	99.9396	99.8847	99.9947	18.4432	376688	435	376084	20	17	85.0000
dgrover-gatk	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.7972	99.8841	99.7104	37.7838	3446	4	3443	10	2	20.0000
bgallagher-sentieon	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.6672	99.8841	99.4512	37.3053	3446	4	3443	19	2	10.5263
hfeng-pmm3	SNP	*	map_siren	homalt	99.9057	99.8840	99.9274	53.2388	55092	64	55083	40	22	55.0000
rpoplin-dv42	SNP	*	HG002compoundhet	hetalt	99.9420	99.8840	100.0000	22.1519	861	1	861	0	0
rpoplin-dv42	SNP	tv	HG002compoundhet	hetalt	99.9420	99.8840	100.0000	22.1519	861	1	861	0	0

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