PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
9401-9450 / 86044 show all
dgrover-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
99.0806
99.8938
98.2806
45.8961
103461110346181177
97.7901
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.1989
99.8938
96.5606
60.0492
376243762134131
97.7612
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.1989
99.8938
96.5606
60.0492
376243762134131
97.7612
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.1733
99.8938
96.5110
60.0492
376243762136134
98.5294
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.1733
99.8938
96.5110
60.0492
376243762136134
98.5294
raldana-dualsentieonINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
98.9858
99.8938
98.0942
44.9243
103461110346201197
98.0100
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.1861
99.8938
96.5358
60.0431
376243762135132
97.7778
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.1861
99.8938
96.5358
60.0431
376243762135132
97.7778
bgallagher-sentieonINDEL**homalt
99.4457
99.8937
99.0017
58.7526
12503913312504912611237
98.0967
egarrison-hhgaSNPti*homalt
99.9365
99.8935
99.9794
16.8582
802183855802203165113
68.4848
ltrigg-rtg2SNP***
99.8749
99.8935
99.8562
17.0058
3051374325230515314395283
6.4391
jli-customSNPtisegduphomalt
99.9200
99.8934
99.9467
87.3710
74978749744
100.0000
ckim-dragenSNPtvlowcmp_SimpleRepeat_quadTR_11to50het
99.7237
99.8934
99.5546
42.4719
468454694212
9.5238
dgrover-gatkSNPtvlowcmp_SimpleRepeat_quadTR_11to50het
98.2887
99.8934
96.7349
41.2956
4684546811581
0.6329
ndellapenna-hhgaSNPtisegduphomalt
99.7406
99.8934
99.5882
88.2312
7497874973131
100.0000
jlack-gatkSNPtvHG002complexvar*
99.9000
99.8932
99.9069
22.4572
24588926324579522981
35.3712
jlack-gatkSNPtvHG002complexvarhet
99.8776
99.8932
99.8620
22.3009
15057016115049420864
30.7692
hfeng-pmm1SNPti*het
99.9312
99.8931
99.9694
16.7684
12805211370128047039229
7.3980
bgallagher-sentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
96.9036
99.8930
94.0880
54.4523
280132801176175
99.4318
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
97.7832
99.8930
95.7607
54.7214
280132801124124
100.0000
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
97.7832
99.8930
95.7607
54.8681
280132801124124
100.0000
ltrigg-rtg1SNP***
99.8754
99.8921
99.8587
17.5113
3051330329630515184317267
6.1849
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_homopolymer_6to10het
99.9052
99.8917
99.9188
56.2157
11072121106894
44.4444
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.5138
99.8915
99.1389
78.0222
921192183
37.5000
jli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.7293
99.8915
99.5676
76.0425
921192142
50.0000
jmaeng-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.7833
99.8915
99.6753
78.2895
921192132
66.6667
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6744
99.8915
99.4583
77.8018
921191852
40.0000
ckim-gatkSNPtifunc_cds*
99.6887
99.8912
99.4870
29.0714
137721513770711
1.4085
cchapple-customSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.9456
99.8912
100.0000
31.5724
27553274600
dgrover-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50*
99.8437
99.8912
99.7961
33.9853
734787343153
20.0000
jmaeng-gatkSNPtifunc_cds*
99.5302
99.8912
99.1718
29.3312
1377215137701151
0.8696
ltrigg-rtg1SNPtifunc_cds*
99.7465
99.8912
99.6022
21.3270
137721513771551
1.8182
ltrigg-rtg1SNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.8184
99.8912
99.7456
35.4899
27553274571
14.2857
jpowers-varprowlSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
98.0622
99.8912
96.2989
47.9935
27553275810673
68.8679
raldana-dualsentieonSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9306
99.8911
99.9703
61.3700
10086111008633
100.0000
dgrover-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9282
99.8911
99.9653
56.4446
20177222017777
100.0000
hfeng-pmm3SNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9257
99.8911
99.9604
56.1148
20177222017787
87.5000
hfeng-pmm1INDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.8909
99.8909
99.8909
48.7917
36624366244
100.0000
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
99.5376
99.8908
99.1870
59.6192
182921830151
6.6667
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.5095
99.8906
99.1314
69.3307
913191380
0.0000
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.4553
99.8906
99.0239
69.8002
913191390
0.0000
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.6181
99.8906
99.3471
70.2781
913191360
0.0000
dgrover-gatkINDEL**homalt
99.5819
99.8906
99.2752
59.0938
125035137125045913890
97.4808
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.8360
99.8906
99.7814
68.9936
913191321
50.0000
gduggal-bwafbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
98.1193
99.8906
96.4097
74.9802
9131913343
8.8235
eyeh-varpipeSNP*HG002complexvarhet
99.8105
99.8904
99.7307
18.2348
4649905104296101160174
15.0000
jlack-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9087
99.8904
99.9269
30.4624
27353273522
100.0000
dgrover-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9269
99.8904
99.9635
30.9962
27353273511
100.0000
dgrover-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.9175
99.8900
99.9450
60.3037
10899121089565
83.3333
jli-customINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.4256
99.8900
98.9654
59.3515
3634436353837
97.3684