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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
9351-9400 / 86044 show all
astatham-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.9498
99.8997
100.0000
34.2631
39834398300
hfeng-pmm3SNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.9373
99.8997
99.9749
35.9073
39834398311
100.0000
hfeng-pmm3SNP**het
99.9317
99.8994
99.9639
18.5779
18717021885187157867530
4.4444
jli-customINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.6951
99.8992
99.4918
73.2959
307303130737157151
96.1783
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.9129
99.8992
99.9266
60.1913
10900111089685
62.5000
ckim-vqsrINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.5126
99.8992
99.1290
74.4665
307303130730270263
97.4074
eyeh-varpipeSNP*HG002complexvar*
99.8557
99.8989
99.8126
18.3366
7536227636998061314293
22.2983
hfeng-pmm2SNPti*het
99.9215
99.8989
99.9442
17.8405
12805951296128054571524
3.3566
ltrigg-rtg2SNPti**
99.8963
99.8985
99.8940
15.8136
2083396211620833012210180
8.1448
cchapple-customSNPti*homalt
99.9468
99.8984
99.9953
15.1867
8022228168015523834
89.4737
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.8728
99.8982
99.8474
55.2916
39274392761
16.6667
ckim-dragenSNP*HG002compoundhethomalt
99.8656
99.8980
99.8332
35.0217
1077111107711818
100.0000
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
98.3615
99.8976
96.8719
41.6063
1951219516362
98.4127
jli-customSNP*segduphomalt
99.9023
99.8976
99.9069
88.0536
1073211107321010
100.0000
jli-customSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.8465
99.8976
99.7954
28.9038
39024390381
12.5000
ckim-vqsrINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
98.3615
99.8976
96.8719
41.6063
1951219516362
98.4127
egarrison-hhgaSNP*segduphomalt
99.7815
99.8976
99.6657
89.1087
1073211107323636
100.0000
dgrover-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
98.3863
99.8976
96.9200
41.5335
1951219516262
100.0000
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
98.3863
99.8976
96.9200
41.4826
1951219516262
100.0000
bgallagher-sentieonINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
97.6232
99.8976
95.4501
41.3150
1951219519392
98.9247
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.4573
99.8975
99.0210
40.1856
1072111107211061
0.9434
dgrover-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.5866
99.8975
99.2777
41.4403
107211110721781
1.2821
raldana-dualsentieonSNPtv**
99.9049
99.8971
99.9127
21.2799
96869299896861284644
5.2010
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.5440
99.8969
99.1935
59.0506
387443936320
0.0000
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6375
99.8969
99.3795
60.3689
387443844242
8.3333
jli-customINDEL*HG002complexvarhomalt
99.8318
99.8964
99.7673
56.4104
2699928270076357
90.4762
bgallagher-sentieonSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.7144
99.8963
99.5331
54.5778
27930292792913110
7.6336
astatham-gatkINDELD1_5HG002complexvarhomalt
99.8868
99.8962
99.8774
60.2109
1058711105921311
84.6154
bgallagher-sentieonSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9232
99.8960
99.9505
56.3257
2017821201781010
100.0000
jmaeng-gatkINDELI1_5HG002complexvarhomalt
99.8366
99.8959
99.7773
52.9712
1343414134403028
93.3333
raldana-dualsentieonINDELI1_5HG002complexvarhomalt
99.8477
99.8959
99.7995
52.5914
1343414134382727
100.0000
jlack-gatkSNPtvHG002complexvarhomalt
99.9385
99.8959
99.9811
22.6324
9501299949941814
77.7778
cchapple-customINDEL*segduphomalt
99.5843
99.8958
99.2746
93.0445
959195877
100.0000
ckim-dragenINDEL*segduphomalt
99.2754
99.8958
98.6626
93.6124
95919591312
92.3077
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.0301
99.8948
98.1803
50.4508
4748547488887
98.8636
ltrigg-rtg1SNPti**
99.8970
99.8948
99.8992
16.3223
2083318219420832412102174
8.2778
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.0508
99.8948
98.2209
50.1958
4748547488685
98.8372
eyeh-varpipeSNPtiHG002complexvarhet
99.8630
99.8948
99.8311
17.2379
314435331297366503109
21.6700
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.8446
99.8948
97.8162
47.4789
474854748106105
99.0566
jlack-gatkSNP*HG002complexvar*
99.9118
99.8944
99.9292
19.3948
753584797753425534201
37.6404
jlack-gatkSNPtiHG002complexvar*
99.9170
99.8944
99.9396
17.8349
507899537507834307122
39.7394
ghariani-varprowlSNPtifunc_cdshet
99.5080
99.8942
99.1249
31.7349
849598495752
2.6667
jlack-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.5772
99.8940
99.2624
72.0923
1884218841411
78.5714
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7617
99.8940
99.6298
72.7247
18842188475
71.4286
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7617
99.8940
99.6298
72.7364
18842188475
71.4286
cchapple-customSNP**homalt
99.9445
99.8940
99.9951
16.2464
1178910125111776365851
87.9310
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7617
99.8940
99.6298
72.7247
18842188475
71.4286
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.6825
99.8940
99.4720
72.6656
188421884108
80.0000
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7617
99.8940
99.6298
72.6774
18842188475
71.4286
bgallagher-sentieonINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
98.6696
99.8938
97.4750
45.7112
103461110346268263
98.1343