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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
9251-9300 / 86044 show all
rpoplin-dv42SNP*lowcmp_SimpleRepeat_triTR_11to50het
99.9241
99.9133
99.9349
33.6595
46124460732
66.6667
ckim-dragenSNP*lowcmp_SimpleRepeat_triTR_11to50het
99.7626
99.9133
99.6124
36.8335
461244626187
38.8889
ckim-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50het
99.8159
99.9133
99.7187
39.4602
461244608133
23.0769
raldana-dualsentieonSNP***
99.9260
99.9131
99.9389
18.4181
305196526543051826186797
5.1955
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.9420
99.9130
99.9710
37.2906
34473344311
100.0000
eyeh-varpipeSNP*HG002complexvarhomalt
99.9303
99.9127
99.9480
18.2871
288323252263218137103
75.1825
dgrover-gatkSNPtvHG002compoundhethomalt
99.8671
99.9115
99.8228
42.6879
33853338065
83.3333
hfeng-pmm3INDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9159
99.9115
99.9203
55.8220
11286101128699
100.0000
bgallagher-sentieonSNPtvHG002compoundhethomalt
99.8524
99.9115
99.7933
42.7775
33853338076
85.7143
ghariani-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.2514
99.9113
98.6002
57.2710
1127111271610
62.5000
jpowers-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.0769
99.9113
98.2563
59.2395
1127111272010
50.0000
jpowers-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
98.7080
99.9112
97.5335
63.5201
2250222545732
56.1404
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9556
99.9112
100.0000
52.0358
22502225000
ghariani-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
98.8162
99.9112
97.7450
61.5346
2250222545232
61.5385
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9556
99.9112
100.0000
51.6129
22502225000
hfeng-pmm3SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9556
99.9112
100.0000
52.9781
22502225000
hfeng-pmm3SNPti*het
99.9388
99.9112
99.9664
17.2454
12807531138128070343018
4.1861
jlack-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9334
99.9112
99.9556
51.6538
22502225011
100.0000
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.8211
99.9112
99.7312
57.1511
22502222663
50.0000
jli-customSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9407
99.9110
99.9703
35.3939
67396673922
100.0000
cchapple-customSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9481
99.9110
99.9851
30.4766
67396672411
100.0000
ckim-dragenSNP*lowcmp_SimpleRepeat_homopolymer_6to10het
99.8692
99.9098
99.8288
57.6963
110741011076193
15.7895
ckim-dragenSNPtvHG002complexvarhet
99.9058
99.9098
99.9019
22.2740
15059513615074014870
47.2973
jlack-gatkSNP*HG002complexvarhomalt
99.9456
99.9096
99.9816
19.7398
2883132612882845346
86.7925
hfeng-pmm2SNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9318
99.9091
99.9545
42.7232
21992219911
100.0000
hfeng-pmm3SNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9318
99.9091
99.9545
42.3026
21992219911
100.0000
hfeng-pmm1SNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9318
99.9091
99.9545
42.4084
21992219911
100.0000
ghariani-varprowlSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.1675
99.9091
98.4368
44.5929
2199222043513
37.1429
eyeh-varpipeSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7733
99.9091
99.6378
40.5384
21992220184
50.0000
ckim-dragenSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8865
99.9091
99.8638
42.0263
21992220033
100.0000
jli-customSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8864
99.9091
99.8638
41.8076
21992219932
66.6667
jpowers-varprowlSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.5482
99.9091
99.1899
44.8772
2199222041812
66.6667
ckim-vqsrINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.6856
99.9087
99.4636
76.0319
218792021879118117
99.1525
cchapple-customSNPtvfunc_cds*
99.5556
99.9085
99.2053
32.6708
436744369350
0.0000
cchapple-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.4934
99.9080
99.0821
64.7126
217222159201
5.0000
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
95.6922
99.9080
91.8178
68.6059
2172220761853
1.6216
astatham-gatkINDEL*HG002complexvarhomalt
99.7747
99.9075
99.6422
57.3610
2700225270129794
96.9072
bgallagher-sentieonSNPtvsegduphomalt
99.8611
99.9074
99.8149
89.4615
32353323566
100.0000
jlack-gatkSNPtvsegduphomalt
99.8611
99.9074
99.8149
89.7982
32353323566
100.0000
hfeng-pmm2SNPtvsegduphomalt
99.8919
99.9074
99.8765
90.2428
32353323544
100.0000
cchapple-customSNPtvsegduphomalt
99.8144
99.9074
99.7215
89.1707
32353322399
100.0000
jpowers-varprowlSNPtvsegduphomalt
99.1421
99.9074
98.3886
91.4237
3235332365329
54.7170
jli-customSNPtvsegduphomalt
99.8611
99.9074
99.8149
89.3818
32353323566
100.0000
hfeng-pmm1SNP*HG002compoundhethomalt
99.9026
99.9073
99.8980
34.9324
1077210107721111
100.0000
hfeng-pmm3INDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9071
99.9071
99.9071
44.1764
21502215022
100.0000
hfeng-pmm1INDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9071
99.9071
99.9071
44.1619
21502215022
100.0000
ghariani-varprowlSNP*segduphomalt
99.4257
99.9069
98.9491
89.5722
10733101073411465
57.0175
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.9156
99.9069
99.9243
55.5895
171611617157138
61.5385
rpoplin-dv42SNPtisegduphomalt
99.8469
99.9067
99.7871
88.5156
7498774981616
100.0000
egarrison-hhgaSNPtisegduphomalt
99.8003
99.9067
99.6942
88.4424
7498774982323
100.0000