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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
9201-9250 / 86044 show all
eyeh-varpipeSNP*lowcmp_SimpleRepeat_homopolymer_6to10het
99.7381
99.9188
99.5581
52.7387
110759108154816
33.3333
eyeh-varpipeSNPtiHG002complexvarhomalt
99.9332
99.9188
99.9475
17.3280
1933071571807989569
72.6316
ckim-gatkINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.5208
99.9187
99.1260
74.4622
307362530736271264
97.4170
bgallagher-sentieonINDEL*HG002complexvarhomalt
99.7010
99.9186
99.4844
57.3638
270052227015140135
96.4286
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_triTR_11to50*
99.7691
99.9184
99.6202
33.3544
734967345283
10.7143
astatham-gatkINDELI1_5HG002complexvarhomalt
99.8625
99.9182
99.8069
52.9404
1343711134422626
100.0000
jli-customINDELI1_5HG002complexvarhomalt
99.8996
99.9182
99.8811
52.2818
1343711134411614
87.5000
jlack-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.8365
99.9182
99.7549
50.2169
36633366399
100.0000
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8352
99.9180
99.7526
51.8658
24372241961
16.6667
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8975
99.9180
99.8770
52.7132
24372243730
0.0000
jli-customSNPtiHG002complexvar*
99.9464
99.9180
99.9748
17.5160
50801941750797912858
45.3125
jli-customSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9097
99.9179
99.9015
54.3245
60835608364
66.6667
jpowers-varprowlSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.3232
99.9179
98.7356
57.1091
6083560917858
74.3590
ghariani-varprowlSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
98.9200
99.9179
97.9418
56.8515
60835609112859
46.0938
cchapple-customSNPtifunc_cdshet
99.7946
99.9177
99.6718
27.6397
849778504281
3.5714
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.6714
99.9177
99.4264
57.8940
6067560673534
97.1429
jmaeng-gatkINDELI6_15HG002complexvarhomalt
98.1392
99.9176
96.4229
55.6886
1213112134545
100.0000
astatham-gatkINDELI6_15HG002complexvarhomalt
98.5378
99.9176
97.1955
55.5239
1213112133535
100.0000
bgallagher-sentieonINDELI6_15HG002complexvarhomalt
98.2186
99.9176
96.5764
55.7279
1213112134343
100.0000
ckim-vqsrINDELI6_15HG002complexvarhomalt
98.4178
99.9176
96.9624
55.5753
1213112133838
100.0000
dgrover-gatkINDELI6_15HG002complexvarhomalt
98.5378
99.9176
97.1955
55.8074
1213112133535
100.0000
ckim-gatkINDELI6_15HG002complexvarhomalt
98.3779
99.9176
96.8850
55.5556
1213112133939
100.0000
raldana-dualsentieonINDELI6_15HG002complexvarhomalt
98.1789
99.9176
96.4996
55.2987
1213112134444
100.0000
hfeng-pmm3INDELI1_5map_sirenhomalt
99.7534
99.9175
99.5898
76.7011
12111121453
60.0000
jmaeng-gatkINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.8981
99.9175
97.8993
62.0929
3635336357875
96.1538
ckim-gatkINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.9385
99.9175
97.9784
62.3961
3635336357573
97.3333
ckim-dragenSNPtvHG002complexvar*
99.9267
99.9175
99.9359
22.5633
24594920324620015880
50.6329
ckim-vqsrINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.9385
99.9175
97.9784
62.3961
3635336357573
97.3333
cchapple-customSNP*func_cds*
99.7855
99.9174
99.6539
26.7611
181351518142631
1.5873
raldana-dualsentieonINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
99.2190
99.9172
98.5304
36.2675
724167241108107
99.0741
hfeng-pmm3SNPtv**
99.9443
99.9171
99.9715
21.1004
96888680496880427631
11.2319
bgallagher-sentieonSNP*HG002compoundhethomalt
99.8887
99.9165
99.8609
34.8774
107739107681514
93.3333
dgrover-gatkSNP*HG002compoundhethomalt
99.8980
99.9165
99.8794
34.8304
107739107681312
92.3077
dgrover-gatkSNPtiHG002complexvarhet
99.9452
99.9164
99.9739
17.0118
3145032633144498232
39.0244
jlack-gatkSNPtiHG002complexvarhomalt
99.9491
99.9163
99.9819
18.2375
1933011621932903532
91.4286
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.0820
99.9158
98.2619
50.9937
4749447498483
98.8095
ckim-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.0407
99.9158
98.1807
50.4457
4749447498887
98.8636
astatham-gatkSNP*HG002complexvarhomalt
99.9516
99.9158
99.9875
19.8527
2883312432883063634
94.4444
bgallagher-sentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.5576
99.9158
97.2359
49.7376
474944749135134
99.2593
dgrover-gatkSNP*HG002complexvarhet
99.9434
99.9156
99.9712
18.5452
46510439346497413453
39.5522
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.3497
99.9156
98.7902
51.5758
2368223682929
100.0000
jmaeng-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.7284
99.9156
97.5690
55.8647
2368223685957
96.6102
jmaeng-gatkINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.4869
99.9155
99.0621
74.5055
307352630735291281
96.5636
raldana-dualsentieonINDELD1_5HG002complexvarhomalt
99.8492
99.9151
99.7834
59.8813
105899105942321
91.3043
bgallagher-sentieonINDELD1_5HG002complexvarhomalt
99.8445
99.9151
99.7740
60.1815
105899105942422
91.6667
jli-customINDELD1_5HG002complexvarhomalt
99.9010
99.9151
99.8868
59.4114
105899105931210
83.3333
ckim-vqsrINDELD6_15HG002complexvarhomalt
99.4466
99.9145
98.9831
63.0094
1168111681211
91.6667
ckim-gatkINDELD6_15HG002complexvarhomalt
99.4466
99.9145
98.9831
63.0094
1168111681211
91.6667
dgrover-gatkSNPtvHG002complexvarhet
99.9396
99.9138
99.9655
21.5720
1506011301505255221
40.3846
dgrover-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50het
99.8051
99.9133
99.6971
35.6178
461244608142
14.2857