PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
9151-9200 / 86044 show all
bgallagher-sentieonSNPtvHG002complexvarhet
99.9389
99.9237
99.9542
21.4883
1506161151505406921
30.4348
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.5174
99.9237
99.1144
60.1090
392833917352
5.7143
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.9618
99.9237
100.0000
35.5315
13101131000
dgrover-gatkSNPtvHG002complexvar*
99.9486
99.9236
99.9736
22.0729
2459641882458736532
49.2308
bgallagher-sentieonSNP*HG002complexvarhet
99.9449
99.9235
99.9662
18.4844
46514135646501115750
31.8471
bgallagher-sentieonSNPtiHG002complexvarhet
99.9477
99.9234
99.9720
16.9632
3145252413144718829
32.9545
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.8465
99.9232
99.7699
29.4425
39033390291
11.1111
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9357
99.9228
99.9485
59.3344
38843388422
100.0000
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9614
99.9228
100.0000
59.5375
38843388400
jlack-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9357
99.9228
99.9485
59.3004
38843388422
100.0000
ghariani-varprowlSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
98.7801
99.9228
97.6633
61.6275
3884338879346
49.4624
jli-customSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9228
99.9228
99.9228
59.2856
38843388432
66.6667
jpowers-varprowlSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.1961
99.9228
98.4799
61.8721
3884338876046
76.6667
dgrover-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9357
99.9228
99.9485
59.3897
38843388422
100.0000
cchapple-customSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9485
99.9228
99.9742
56.3906
38843387510
0.0000
hfeng-pmm1SNP***
99.9496
99.9227
99.9766
18.0950
305225723623052118715107
14.9650
ckim-dragenSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8842
99.9226
99.8459
59.1543
38753388762
33.3333
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8325
99.9226
99.7426
60.4661
387533875100
0.0000
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8583
99.9226
99.7940
60.8923
38753387580
0.0000
dgrover-gatkINDEL*HG002complexvarhomalt
99.7765
99.9223
99.6312
57.3581
27006212701610096
96.0000
ckim-dragenSNP*HG002complexvar*
99.9301
99.9223
99.9379
19.4552
753795586754278469236
50.3198
astatham-gatkINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.5289
99.9220
99.1388
74.4236
307372430737267261
97.7528
astatham-gatkSNPtiHG002complexvarhomalt
99.9545
99.9214
99.9876
18.3169
1933111521933012424
100.0000
ckim-dragenSNPtiHG002complexvarhomalt
99.9527
99.9214
99.9840
18.3095
1933111521934173131
100.0000
hfeng-pmm2INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9312
99.9214
99.9410
54.0442
1017081017066
100.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.8821
99.9214
99.8429
48.2941
25422254240
0.0000
rpoplin-dv42INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9214
99.9214
99.9214
54.3038
1017081016988
100.0000
ckim-vqsrINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9116
99.9214
99.9018
54.3272
101708101701010
100.0000
ckim-dragenSNP*HG002complexvarhet
99.9146
99.9212
99.9081
19.1598
465130367465401428195
45.5607
hfeng-pmm2SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9455
99.9208
99.9703
62.5348
1008981008933
100.0000
hfeng-pmm3SNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9406
99.9208
99.9604
49.7187
1009481009443
75.0000
ghariani-varprowlSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.8554
99.9208
95.8736
65.4859
10089810107435273
62.7586
raldana-dualsentieonSNPti**
99.9357
99.9205
99.9510
17.0225
208385316582083794102254
5.2838
ckim-vqsrINDELD1_5*homalt
99.7969
99.9203
99.6738
62.4858
488873948894160157
98.1250
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.1994
99.9203
96.5367
59.9507
376333763135133
98.5185
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.1994
99.9203
96.5367
59.9507
376333763135133
98.5185
bgallagher-sentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
97.4618
99.9203
95.1213
59.6779
376333763193190
98.4456
bgallagher-sentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
97.4618
99.9203
95.1213
59.6779
376333763193190
98.4456
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.9202
99.9202
99.9202
44.4375
62635626353
60.0000
dgrover-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.9282
99.9202
99.9362
44.6182
62635626343
75.0000
ckim-dragenSNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.8565
99.9202
99.7929
46.2638
626356265135
38.4615
cchapple-customSNPtifunc_cds*
99.8586
99.9202
99.7971
24.6780
137761113774281
3.5714
rpoplin-dv42SNPtvHG002complexvarhomalt
99.9385
99.9201
99.9569
22.8530
9503576950114137
90.2439
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.4783
99.9198
99.0408
63.4745
249222478242
8.3333
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.7998
99.9198
99.6800
62.5636
24922249280
0.0000
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_triTR_11to50het
99.7984
99.9193
99.6778
30.7392
24762247580
0.0000
bgallagher-sentieonSNPtiHG002compoundhethomalt
99.9053
99.9189
99.8918
30.4822
73886738888
100.0000
dgrover-gatkSNPtiHG002compoundhethomalt
99.9121
99.9189
99.9053
30.4654
73886738877
100.0000
hfeng-pmm3SNPtiHG002compoundhethomalt
99.9256
99.9189
99.9324
30.4123
73886738855
100.0000
raldana-dualsentieonSNPtiHG002compoundhethomalt
99.9189
99.9189
99.9189
30.4421
73886738866
100.0000