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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
9101-9150 / 86044 show all
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.9638
99.9277
100.0000
58.3062
13821140800
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.7474
99.9277
99.5677
58.0918
13821138260
0.0000
ghariani-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
98.8939
99.9277
97.8814
65.9861
1382113863018
60.0000
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.9638
99.9277
100.0000
56.9470
13821138200
jlack-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.9638
99.9277
100.0000
57.3061
13821138200
jlack-gatkSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.9275
99.9275
99.9275
36.0093
27562275622
100.0000
hfeng-pmm1SNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.9275
99.9275
99.9275
37.0751
27562275622
100.0000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.9275
99.9275
99.9275
36.2312
27562275622
100.0000
rpoplin-dv42SNPtv*het
99.9398
99.9275
99.9522
22.4174
591267429591187283104
36.7491
ckim-dragenSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.9637
99.9275
100.0000
36.4245
27562275600
dgrover-gatkSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.9275
99.9275
99.9275
36.3783
27562275622
100.0000
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9452
99.9270
99.9635
30.8140
27362273611
100.0000
hfeng-pmm1SNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9452
99.9270
99.9635
32.6526
27362273611
100.0000
jli-customSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9452
99.9270
99.9635
30.9710
27362273611
100.0000
rpoplin-dv42SNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9452
99.9270
99.9635
32.1349
27362273611
100.0000
raldana-dualsentieonSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9452
99.9270
99.9635
30.8140
27362273611
100.0000
dgrover-gatkSNPtiHG002complexvar*
99.9530
99.9268
99.9791
17.5262
50806437250800010656
52.8302
ckim-dragenSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.9175
99.9267
99.9084
60.9850
10903810906102
20.0000
ckim-dragenSNPtiHG002complexvarhet
99.9189
99.9266
99.9111
17.5776
314535231314661280125
44.6429
ckim-dragenSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.8403
99.9262
99.7545
48.2662
406234063102
20.0000
cchapple-customSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.8769
99.9262
99.8277
45.6225
40623405571
14.2857
rpoplin-dv42SNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.9262
99.9262
99.9262
45.5021
40623406233
100.0000
ckim-dragenINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.7413
99.9261
99.5572
74.4050
13521134964
66.6667
jlack-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.7418
99.9261
99.5582
73.6157
13521135263
50.0000
hfeng-pmm1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.9261
99.9261
99.9261
72.6113
13521135210
0.0000
dgrover-gatkSNP*HG002complexvar*
99.9517
99.9260
99.9773
19.0606
75382355875366817188
51.4620
ckim-dragenSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9481
99.9259
99.9703
34.6642
67405674022
100.0000
jlack-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9333
99.9259
99.9407
34.6955
67405674043
75.0000
hfeng-pmm3SNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9407
99.9259
99.9555
36.4048
67405674033
100.0000
hfeng-pmm2SNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9480
99.9257
99.9703
57.5983
20184152018465
83.3333
dgrover-gatkINDELI1_5HG002complexvarhomalt
99.8663
99.9256
99.8070
53.0009
1343810134432625
96.1538
bgallagher-sentieonINDELI1_5HG002complexvarhomalt
99.8440
99.9256
99.7625
52.9997
1343810134433231
96.8750
hfeng-pmm2SNP***
99.9416
99.9254
99.9579
18.8175
3052339228030522021287114
8.8578
jli-customSNPtvHG002complexvarhomalt
99.9542
99.9254
99.9832
22.8543
9504071950291611
68.7500
rpoplin-dv42SNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.9248
99.9248
99.9248
37.2719
39843398433
100.0000
jlack-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.9373
99.9248
99.9498
33.7544
39843398421
50.0000
ckim-dragenSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.9373
99.9248
99.9498
33.3890
39843398422
100.0000
cchapple-customSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.9498
99.9248
99.9749
29.7121
39843397811
100.0000
gduggal-bwafbSNPtvfunc_cdshet
99.1412
99.9247
98.3698
41.4914
265522655440
0.0000
hfeng-pmm1SNPtvfunc_cdshet
99.8871
99.9247
99.8495
28.9115
26552265440
0.0000
rpoplin-dv42SNPtvfunc_cdshet
99.8871
99.9247
99.8495
30.5098
26552265441
25.0000
gduggal-snapfbSNPtvfunc_cdshet
99.0857
99.9247
98.2605
37.4682
265522655470
0.0000
ckim-dragenSNP*HG002complexvarhomalt
99.9551
99.9245
99.9858
19.8995
2883562182885654141
100.0000
ckim-dragenSNPtiHG002complexvar*
99.9317
99.9245
99.9389
17.8695
508052384508287311156
50.1608
dgrover-gatkINDELD1_5HG002complexvarhomalt
99.8963
99.9245
99.8680
60.1555
105908105951412
85.7143
ckim-dragenSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.8953
99.9243
99.8662
56.6428
171641317169237
30.4348
cchapple-customSNPtifunc_cdshomalt
99.9621
99.9242
100.0000
19.3326
52714527000
jlack-gatkSNPtifunc_cdshomalt
99.9621
99.9242
100.0000
19.9058
52714527100
hfeng-pmm3SNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.9618
99.9237
100.0000
34.5327
13101131000
hfeng-pmm2SNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.9618
99.9237
100.0000
35.8158
13101131000