PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 177 178 179 180 181 182 183 184 185 ... 1720 1721 » 9001-9050 / 86044 show all
ghariani-varprowl	SNP	*	HG002complexvar	homalt	99.6051	99.9428	99.2696	21.6199	288407	165	288526	2123	1441	67.8756
jli-custom	INDEL	D1_5	*	homalt	99.8764	99.9428	99.8102	61.2620	48898	28	48904	93	90	96.7742
jlack-gatk	SNP	*	func_cds	homalt	99.9713	99.9427	100.0000	21.3464	6975	4	6975	0	0
cchapple-custom	SNP	*	func_cds	homalt	99.9713	99.9427	100.0000	20.5695	6975	4	6974	0	0
rpoplin-dv42	SNP	*	func_cds	homalt	99.9713	99.9427	100.0000	23.1405	6975	4	6975	0	0
rpoplin-dv42	SNP	*	HG002complexvar	homalt	99.9511	99.9421	99.9601	19.9304	288407	167	288378	115	109	94.7826
rpoplin-dv42	SNP	tv	*	*	99.9512	99.9420	99.9604	21.8980	969128	562	969027	384	163	42.4479
ckim-dragen	SNP	tv	*	het	99.7113	99.9417	99.4820	27.9772	591351	345	591544	3080	126	4.0909
hfeng-pmm3	SNP	ti	*	*	99.9596	99.9417	99.9775	17.0194	2084295	1216	2084236	469	46	9.8081
rpoplin-dv42	SNP	tv	func_cds	homalt	99.9706	99.9413	100.0000	27.8695	1703	1	1703	0	0
raldana-dualsentieon	SNP	ti	func_cds	het	99.8414	99.9412	99.7418	23.3144	8499	5	8497	22	0	0.0000
jmaeng-gatk	SNP	ti	func_cds	het	99.2988	99.9412	98.6647	33.9419	8499	5	8497	115	1	0.8696
ckim-gatk	SNP	ti	func_cds	het	99.5548	99.9412	99.1713	33.6071	8499	5	8497	71	1	1.4085
dgrover-gatk	SNP	tv	HG002complexvar	homalt	99.9637	99.9411	99.9863	22.7977	95055	56	95040	13	11	84.6154
jpowers-varprowl	SNP	tv	HG002complexvar	homalt	99.4724	99.9411	99.0081	25.6082	95055	56	95130	953	743	77.9643
jli-custom	SNP	tv	*	het	99.8561	99.9410	99.7714	21.8920	591347	349	591292	1355	58	4.2804
jli-custom	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	99.3587	99.9407	98.7835	42.3002	6740	4	6740	83	1	1.2048
rpoplin-dv42	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.8741	99.9407	99.8075	37.7626	6741	4	6741	13	5	38.4615
bgallagher-sentieon	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.9456	99.9406	99.9505	49.3379	10096	6	10096	5	5	100.0000
bgallagher-sentieon	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5837	99.9406	99.2292	75.9456	21886	13	21886	170	169	99.4118
dgrover-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.9554	99.9406	99.9703	49.4797	10096	6	10096	3	3	100.0000
jli-custom	SNP	*	HG002complexvar	homalt	99.9614	99.9404	99.9823	19.9145	288402	172	288385	51	37	72.5490
jlack-gatk	SNP	*	*	*	99.7200	99.9393	99.5016	23.6335	3052765	1854	3052612	15290	548	3.5840
jlack-gatk	SNP	ti	*	*	99.7777	99.9393	99.6165	21.7408	2084246	1265	2084182	8024	364	4.5364
jlack-gatk	SNP	tv	*	*	99.5956	99.9388	99.2547	27.4223	969097	593	969008	7276	194	2.6663
hfeng-pmm1	SNP	tv	segdup	homalt	99.8765	99.9382	99.8149	90.2264	3236	2	3236	6	6	100.0000
hfeng-pmm3	SNP	tv	segdup	homalt	99.8920	99.9382	99.8457	90.1933	3236	2	3236	5	5	100.0000
raldana-dualsentieon	SNP	tv	segdup	homalt	99.8765	99.9382	99.8149	89.2756	3236	2	3236	6	6	100.0000
ltrigg-rtg2	SNP	tv	segdup	homalt	99.6765	99.9382	99.4161	89.5171	3236	2	3235	19	19	100.0000
dgrover-gatk	SNP	tv	segdup	homalt	99.8765	99.9382	99.8149	89.5365	3236	2	3236	6	6	100.0000
astatham-gatk	SNP	tv	segdup	homalt	99.8765	99.9382	99.8149	89.4470	3236	2	3236	6	6	100.0000
ltrigg-rtg1	SNP	tv	segdup	homalt	99.6765	99.9382	99.4161	89.9204	3236	2	3235	19	19	100.0000
ckim-dragen	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9159	99.9380	99.8938	56.3777	11289	7	11284	12	11	91.6667
jpowers-varprowl	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.9538	99.9378	97.9890	60.2085	1608	1	1608	33	18	54.5455
ghariani-varprowl	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.1063	99.9378	98.2885	58.1479	1608	1	1608	28	18	64.2857
ckim-gatk	INDEL	D1_5	*	homalt	99.8051	99.9366	99.6739	62.4819	48895	31	48902	160	157	98.1250
cchapple-custom	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8802	99.9362	99.8243	43.3188	6264	4	6250	11	3	27.2727
bgallagher-sentieon	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.6756	99.9350	99.4176	34.7502	4613	3	4609	27	2	7.4074
dgrover-gatk	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5418	99.9350	99.1517	74.5652	30741	20	30741	263	257	97.7186
eyeh-varpipe	SNP	*	segdup	homalt	99.9005	99.9348	99.8662	89.0870	10736	7	10453	14	14	100.0000
ltrigg-rtg1	SNP	*	segdup	homalt	99.7351	99.9348	99.5361	88.6997	10736	7	10729	50	50	100.0000
dgrover-gatk	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9343	99.9343	99.9343	54.4380	6084	4	6084	4	4	100.0000
bgallagher-sentieon	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9343	99.9343	99.9343	54.3868	6084	4	6084	4	4	100.0000
cchapple-custom	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9260	99.9343	99.9177	51.2440	6084	4	6070	5	2	40.0000
raldana-dualsentieon	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7452	99.9341	99.5570	56.8831	6068	4	6068	27	27	100.0000
hfeng-pmm2	SNP	ti	*	*	99.9484	99.9340	99.9629	17.4396	2084135	1376	2084077	774	72	9.3023
hfeng-pmm3	SNP	*	*	*	99.9548	99.9339	99.9756	18.3516	3052601	2018	3052460	744	76	10.2151
ghariani-varprowl	SNP	tv	HG002complexvar	homalt	99.3856	99.9338	98.8434	25.4168	95048	63	95121	1113	736	66.1276
bgallagher-sentieon	SNP	ti	HG002complexvar	*	99.9558	99.9337	99.9780	17.4939	508099	337	508035	112	53	47.3214
ltrigg-rtg1	SNP	ti	segdup	homalt	99.7604	99.9334	99.5880	88.0751	7500	5	7494	31	31	100.0000

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge