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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
8951-9000 / 86044 show all
gduggal-bwafbSNPtifunc_cds*
99.6673
99.9492
99.3869
27.6810
13780713780852
2.3529
rpoplin-dv42SNPtifunc_cds*
99.9420
99.9492
99.9347
23.0636
1378071377892
22.2222
ltrigg-rtg1SNPtv*homalt
99.9663
99.9491
99.9836
19.8090
3769291923769636242
67.7419
dgrover-gatkINDELD1_5*homalt
99.8204
99.9489
99.6922
62.5668
489012548906151149
98.6755
raldana-dualsentieonINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
98.2138
99.9488
96.5381
40.8253
1952119527069
98.5714
jlack-gatkSNPtv*homalt
99.9678
99.9488
99.9867
20.1040
3769301933769125030
60.0000
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
98.3623
99.9488
96.8254
41.7173
1952119526462
96.8750
jpowers-varprowlSNPtiHG002complexvarhomalt
99.7216
99.9488
99.4954
19.7390
19336499193412981709
72.2732
ltrigg-rtg2SNPtv*homalt
99.9678
99.9486
99.9870
19.3650
3769271943769514941
83.6735
ltrigg-rtg1SNP**homalt
99.9664
99.9480
99.9848
17.4153
11795436141179482179154
86.0335
jli-customSNPtiHG002complexvarhomalt
99.9648
99.9478
99.9819
18.3860
1933621011933563526
74.2857
astatham-gatkSNPtv*homalt
99.9694
99.9475
99.9912
19.9071
3769251983769103326
78.7879
ltrigg-rtg1SNPti*homalt
99.9664
99.9474
99.9854
16.2302
802614422802519117112
95.7265
ghariani-varprowlSNPtiHG002complexvarhomalt
99.7133
99.9473
99.4805
19.5938
1933591021934051010705
69.8020
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7091
99.9470
99.4723
72.1242
188511885109
90.0000
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7091
99.9470
99.4723
72.7691
188511885108
80.0000
jpowers-varprowlSNP*HG002complexvarhomalt
99.6393
99.9463
99.3342
21.7803
28841915528854219341452
75.0776
gduggal-snapfbSNP*func_cdshet
99.5360
99.9462
99.1291
30.5670
11155611155981
1.0204
raldana-dualsentieonSNP*func_cdshet
99.8299
99.9462
99.7139
24.9799
11155611152320
0.0000
rpoplin-dv42SNP*func_cdshet
99.9149
99.9462
99.8836
25.6262
11155611152133
23.0769
hfeng-pmm1SNP*func_cdshet
99.9015
99.9462
99.8567
23.9755
11155611152160
0.0000
gduggal-bwafbSNP*func_cdshet
99.3985
99.9462
98.8568
33.7832
111556111551292
1.5504
hfeng-pmm2SNPtiHG002compoundhethomalt
99.9324
99.9459
99.9189
30.7750
73904739066
100.0000
rpoplin-dv42SNPti**
99.9621
99.9459
99.9782
17.6958
208438311282084320454276
60.7930
ckim-vqsrINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9182
99.9454
99.8909
51.3011
36642366444
100.0000
bgallagher-sentieonSNPtvHG002complexvarhomalt
99.9663
99.9453
99.9874
22.7972
9505952950441210
83.3333
dgrover-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.7221
99.9452
99.4999
76.1475
218871221887110109
99.0909
dgrover-gatkINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.9522
99.9450
97.9790
62.3287
3636236367574
98.6667
bgallagher-sentieonINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.3899
99.9450
96.8825
62.1062
363623636117115
98.2906
astatham-gatkINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.9522
99.9450
97.9790
62.2367
3636236367574
98.6667
raldana-dualsentieonINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.8043
99.9450
97.6894
60.7922
3636236368684
97.6744
rpoplin-dv42SNP*func_cds*
99.9366
99.9449
99.9284
24.7263
181401018137133
23.0769
raldana-dualsentieonINDELD1_5*homalt
99.7919
99.9448
99.6394
61.4897
488992748904177175
98.8701
astatham-gatkINDELD1_5*homalt
99.8143
99.9448
99.6841
62.4034
488992748904155152
98.0645
rpoplin-dv42SNP***
99.9587
99.9447
99.9728
19.0681
305293016893052766832433
52.0433
dgrover-gatkSNPtiHG002complexvarhomalt
99.9661
99.9447
99.9876
18.3249
1933561071933462424
100.0000
jpowers-varprowlSNP*segduphomalt
99.4812
99.9441
99.0225
89.9716
1073761073810665
61.3208
jli-customSNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.5868
99.9441
99.2321
39.7088
10726610726831
1.2048
hfeng-pmm2SNP*segduphomalt
99.9116
99.9441
99.8791
88.8962
107376107371313
100.0000
dgrover-gatkSNP*HG002complexvarhomalt
99.9653
99.9435
99.9872
19.8551
2884111632883863735
94.5946
ckim-dragenINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.2414
99.9435
98.5491
72.6182
3535235325252
100.0000
jpowers-varprowlSNPtvlowcmp_SimpleRepeat_diTR_11to50homalt
95.8422
99.9434
92.0643
68.8076
176611775153105
68.6275
ghariani-varprowlSNPtvlowcmp_SimpleRepeat_diTR_11to50homalt
95.5070
99.9434
91.4477
66.7295
176611775166104
62.6506
ghariani-varprowlSNPtifunc_cdshomalt
99.8769
99.9431
99.8107
21.2934
527235272107
70.0000
dgrover-gatkSNPtifunc_cdshomalt
99.9716
99.9431
100.0000
19.7443
52723527200
bgallagher-sentieonSNPtifunc_cdshomalt
99.9716
99.9431
100.0000
19.6954
52723527200
rpoplin-dv42SNPtifunc_cdshomalt
99.9716
99.9431
100.0000
21.4775
52723527200
jpowers-varprowlSNPtifunc_cdshomalt
99.9052
99.9431
99.8674
21.7810
52723527277
100.0000
jli-customSNPtifunc_cdshomalt
99.9716
99.9431
100.0000
19.7443
52723527200
gduggal-bwafbSNPtifunc_cdshomalt
99.9716
99.9431
100.0000
21.6059
52723527200