PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
8851-8900 / 86044 show all
jpowers-varprowlSNPtisegduphomalt
99.6282
99.9600
99.2985
89.1736
7502375025336
67.9245
eyeh-varpipeSNPtisegduphomalt
99.9189
99.9600
99.8777
88.4551
75023735199
100.0000
eyeh-varpipeSNP**het
99.1531
99.9599
98.3592
21.9487
1872850751183747130653277
0.9037
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.9198
99.9599
99.8798
58.8255
24931249331
33.3333
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.7200
99.9599
99.4812
60.3982
249312493130
0.0000
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.6801
99.9599
99.4019
61.3678
249312493150
0.0000
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.7799
99.9599
99.6005
62.1560
249312493100
0.0000
ckim-dragenSNPtilowcmp_SimpleRepeat_triTR_11to50het
99.8389
99.9596
99.7185
33.2528
24771248073
42.8571
hfeng-pmm1SNPtiHG002compoundhethomalt
99.9392
99.9594
99.9189
30.5967
73913739166
100.0000
bgallagher-sentieonSNPtv*het
99.8318
99.9594
99.7045
23.0898
591456240591385175353
3.0234
ckim-dragenSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.9182
99.9590
99.8774
49.7020
24381244430
0.0000
ltrigg-rtg1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6765
99.9590
99.3956
49.5528
243812467150
0.0000
ghariani-varprowlSNP**homalt
99.7891
99.9588
99.6200
19.7823
1179670486117979245002208
49.0667
astatham-gatkSNPti*homalt
99.9764
99.9582
99.9946
15.8604
8027023368026934341
95.3488
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.7701
99.9578
97.6102
56.2071
2369123695857
98.2759
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.7701
99.9578
97.6102
56.2071
2369123695857
98.2759
raldana-dualsentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.6672
99.9578
97.4095
54.3286
2369123696362
98.4127
jpowers-varprowlSNPtv*homalt
99.7396
99.9576
99.5225
24.1122
37696316037703818091197
66.1692
jpowers-varprowlSNP*func_cdshomalt
99.8926
99.9570
99.8283
23.7867
6976369761212
100.0000
jli-customSNP*func_cdshomalt
99.9785
99.9570
100.0000
21.0413
69763697600
ghariani-varprowlSNP*func_cdshomalt
99.8569
99.9570
99.7569
23.2466
6976369761712
70.5882
gduggal-bwafbSNP*func_cdshomalt
99.9785
99.9570
100.0000
23.2732
69763697600
bgallagher-sentieonSNP*func_cdshomalt
99.9785
99.9570
100.0000
20.9518
69763697600
dgrover-gatkSNP*func_cdshomalt
99.9785
99.9570
100.0000
20.9966
69763697600
dgrover-gatkSNPti*het
99.9394
99.9568
99.9221
18.8587
1281337554128128399987
8.7087
ckim-dragenSNPti*het
99.7466
99.9566
99.5375
22.8315
128133555612814945955318
5.3401
raldana-dualsentieonSNPtifunc_cds*
99.8985
99.9565
99.8406
21.8782
13781613779220
0.0000
ndellapenna-hhgaSNPtifunc_cds*
99.9384
99.9565
99.9202
22.0527
13781613781110
0.0000
dgrover-gatkSNPtifunc_cds*
99.9347
99.9565
99.9130
23.1014
13781613779120
0.0000
jlack-gatkSNPtifunc_cds*
99.4443
99.9565
98.9373
29.0994
137816137791481
0.6757
bgallagher-sentieonSNPtifunc_cds*
99.9094
99.9565
99.8623
22.5049
13781613779190
0.0000
eyeh-varpipeSNPtv*het
98.0748
99.9564
96.2628
25.2886
59144625858337122648112
0.4945
dgrover-gatkSNP**het
99.9216
99.9564
99.8868
20.4479
187277081718726452122144
6.7861
jli-customSNP*func_cds*
99.9036
99.9559
99.8514
23.3699
18142818142270
0.0000
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9204
99.9557
99.8850
56.3788
112915112911312
92.3077
jli-customINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9292
99.9557
99.9027
55.9852
112915112921111
100.0000
hfeng-pmm1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9778
99.9556
100.0000
53.1919
22511225100
dgrover-gatkSNPtv*het
99.8830
99.9556
99.8105
23.6829
591433263591362112357
5.0757
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9778
99.9556
100.0000
51.4033
22511225100
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9778
99.9556
100.0000
51.9120
22511225100
raldana-dualsentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9778
99.9556
100.0000
51.6849
22511225100
dgrover-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9629
99.9555
99.9703
35.4085
67423674222
100.0000
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9629
99.9555
99.9703
35.1476
67423674222
100.0000
ndellapenna-hhgaSNP*func_cdshet
99.9060
99.9552
99.8568
24.2730
11156511156160
0.0000
hfeng-pmm3SNP*func_cdshet
99.9015
99.9552
99.8478
24.3993
11156511153170
0.0000
jli-customSNP*func_cdshet
99.8568
99.9552
99.7586
24.6835
11156511156270
0.0000
astatham-gatkSNP**homalt
99.9742
99.9548
99.9936
17.1971
117962753411796037667
88.1579
ghariani-varprowlSNPtv*homalt
99.6533
99.9547
99.3538
23.4817
37695017137702324521194
48.6949
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9319
99.9546
99.9092
41.9151
22001220022
100.0000
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9319
99.9546
99.9092
41.8384
22001220022
100.0000