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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
8801-8850 / 86044 show all
raldana-dualsentieonSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.9819
99.9637
100.0000
35.9582
27571275700
jli-customSNPti**
99.9536
99.9637
99.9435
16.8976
208475575620847161179130
11.0263
hfeng-pmm3SNPtifunc_cds*
99.9347
99.9637
99.9057
21.9632
13782513780130
0.0000
hfeng-pmm3SNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.9456
99.9637
99.9275
37.1096
27571275722
100.0000
hfeng-pmm1SNPtifunc_cds*
99.9384
99.9637
99.9130
21.7209
13782513780120
0.0000
egarrison-hhgaSNPtifunc_cds*
99.9456
99.9637
99.9275
22.3817
13782513782100
0.0000
gduggal-snapfbSNPtifunc_cds*
99.7900
99.9637
99.6169
26.0872
13782513782532
3.7736
hfeng-pmm3SNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9452
99.9635
99.9270
31.7808
27371273721
50.0000
hfeng-pmm2SNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9452
99.9635
99.9270
33.2602
27371273721
50.0000
raldana-dualsentieonSNPtvHG002complexvarhomalt
99.9758
99.9632
99.9884
22.8157
950763595070119
81.8182
dgrover-gatkSNP***
99.9456
99.9631
99.9282
19.2565
3053492112730533432195207
9.4305
ltrigg-rtg2SNP*segduphomalt
99.7490
99.9628
99.5362
88.2598
107394107315050
100.0000
jli-customSNPtvfunc_cdshet
99.7746
99.9624
99.5876
29.8712
265612656110
0.0000
dgrover-gatkSNPtvfunc_cdshet
99.8496
99.9624
99.7370
32.6247
26561265570
0.0000
ckim-dragenSNPtvfunc_cdshet
98.9383
99.9624
97.9351
42.1131
265612656560
0.0000
eyeh-varpipeSNPtvfunc_cdshet
91.6856
99.9624
84.6746
34.5435
2656126414780
0.0000
hfeng-pmm3SNPtvfunc_cdshet
99.9059
99.9624
99.8496
29.2819
26561265540
0.0000
jlack-gatkSNPtvfunc_cdshet
98.1334
99.9624
96.3702
44.4444
2656126551000
0.0000
raldana-dualsentieonSNPtvfunc_cdshet
99.7933
99.9624
99.6248
29.8500
265612655100
0.0000
ndellapenna-hhgaSNPtvfunc_cdshet
99.8872
99.9624
99.8121
28.8312
26561265650
0.0000
ndellapenna-hhgaSNPtifunc_cdshomalt
99.9810
99.9621
100.0000
20.8377
52732527300
eyeh-varpipeSNPtifunc_cdshomalt
99.9810
99.9621
100.0000
20.7688
52732521500
egarrison-hhgaSNPtifunc_cdshomalt
99.9810
99.9621
100.0000
20.9919
52732527300
ltrigg-rtg1SNPtifunc_cdshomalt
99.9810
99.9621
100.0000
20.7187
52732527300
ckim-dragenSNPtifunc_cdshomalt
99.9810
99.9621
100.0000
20.1424
52732527300
ckim-dragenSNPtv*homalt
99.9757
99.9621
99.9894
19.9141
3769801433770834029
72.5000
jpowers-varprowlSNPti*homalt
99.8713
99.9620
99.7807
18.3988
80273330580278417641014
57.4830
eyeh-varpipeSNPti*het
99.6284
99.9615
99.2976
20.5443
128140449312643368944171
1.9119
ndellapenna-hhgaSNP*func_cds*
99.9367
99.9614
99.9119
23.5700
18143718143160
0.0000
raldana-dualsentieonSNP*func_cds*
99.8926
99.9614
99.8239
23.4025
18143718140320
0.0000
dgrover-gatkSNP*func_cds*
99.9284
99.9614
99.8954
24.8199
18143718140190
0.0000
jlack-gatkSNP*func_cds*
99.3020
99.9614
98.6513
31.6355
181437181402481
0.4032
hfeng-pmm1SNP*func_cds*
99.9366
99.9614
99.9119
23.2953
18143718140160
0.0000
gduggal-snapfbSNP*func_cds*
99.6978
99.9614
99.4355
28.3431
181437181431032
1.9418
bgallagher-sentieonSNPti*het
99.9232
99.9613
99.8851
18.4052
12813954961281341147476
5.1560
dgrover-gatkSNPtv**
99.9211
99.9611
99.8812
22.3092
969313377969227115381
7.0252
ghariani-varprowlSNPti*homalt
99.8530
99.9608
99.7455
17.9110
80272031580276920481014
49.5117
ckim-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9312
99.9607
99.9018
54.3175
101744101741010
100.0000
eyeh-varpipeSNPtv**
98.8030
99.9607
97.6718
23.4743
96931738195864222851215
0.9409
dgrover-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9362
99.9607
99.9116
54.3466
1017441017499
100.0000
bgallagher-sentieonSNP**het
99.8943
99.9607
99.8280
19.9469
187285173618727263227129
3.9975
bgallagher-sentieonINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9362
99.9607
99.9116
54.3220
1017441017499
100.0000
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9411
99.9607
99.9214
54.3285
1017441017488
100.0000
jli-customINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9411
99.9607
99.9214
54.0979
1017441017488
100.0000
jpowers-varprowlSNP**homalt
99.8292
99.9606
99.6981
20.3193
1179696465117982235732211
61.8808
hfeng-pmm1SNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9703
99.9604
99.9802
50.4100
1009841009822
100.0000
jli-customSNP***
99.9382
99.9603
99.9160
18.2994
3053407121230533022566212
8.2619
hfeng-pmm1SNPtisegduphomalt
99.9467
99.9600
99.9334
88.2045
75023750255
100.0000
hfeng-pmm2SNPtisegduphomalt
99.9201
99.9600
99.8802
88.1936
75023750299
100.0000
hfeng-pmm3SNPtisegduphomalt
99.9600
99.9600
99.9600
88.1690
75023750233
100.0000