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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 172 173 174 175 176 177 178 179 180 ... 1720 1721 » 8751-8800 / 86044 show all
ltrigg-rtg1	SNP	*	func_cds	homalt	99.9857	99.9713	100.0000	22.0795	6977	2	6977	0	0
egarrison-hhga	SNP	*	func_cds	homalt	99.9857	99.9713	100.0000	22.5036	6977	2	6977	0	0
eyeh-varpipe	SNP	*	func_cds	homalt	99.9857	99.9713	100.0000	21.9335	6977	2	6880	0	0
ckim-dragen	SNP	*	func_cds	homalt	99.9857	99.9713	100.0000	21.8438	6977	2	6977	0	0
ndellapenna-hhga	SNP	*	func_cds	homalt	99.9857	99.9713	100.0000	22.3138	6977	2	6977	0	0
eyeh-varpipe	SNP	ti	*	homalt	99.9720	99.9710	99.9731	16.3629	802806	233	790297	213	89	41.7840
hfeng-pmm2	SNP	ti	func_cds	*	99.9166	99.9710	99.8623	22.6414	13783	4	13781	19	0	0.0000
dgrover-gatk	SNP	tv	*	homalt	99.9813	99.9706	99.9920	19.9848	377012	111	376997	30	24	80.0000
raldana-dualsentieon	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9509	99.9705	99.9313	54.2320	10175	3	10175	7	7	100.0000
raldana-dualsentieon	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.9604	99.9703	99.9505	48.8948	10099	3	10099	5	5	100.0000
hfeng-pmm1	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9703	99.9703	99.9703	36.7854	6743	2	6743	2	2	100.0000
eyeh-varpipe	SNP	*	*	homalt	99.9696	99.9699	99.9693	17.3914	1179807	355	1154702	355	142	40.0000
raldana-dualsentieon	SNP	*	HG002complexvar	homalt	99.9794	99.9695	99.9893	19.8637	288486	88	288471	31	29	93.5484
ckim-dragen	SNP	tv	segdup	homalt	99.9074	99.9691	99.8458	89.2553	3237	1	3237	5	5	100.0000
bgallagher-sentieon	SNP	ti	*	*	99.9476	99.9680	99.9272	17.4519	2084844	667	2084781	1519	117	7.7024
eyeh-varpipe	SNP	tv	*	homalt	99.9630	99.9676	99.9583	19.9401	377001	122	371165	155	57	36.7742
bgallagher-sentieon	SNP	*	*	*	99.9296	99.9673	99.8919	18.9151	3053620	999	3053471	3303	195	5.9037
ckim-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7781	99.9671	99.5898	57.9481	6070	2	6070	25	24	96.0000
dgrover-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7781	99.9671	99.5898	57.9684	6070	2	6070	25	24	96.0000
raldana-dualsentieon	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9507	99.9671	99.9343	54.3615	6086	2	6086	4	4	100.0000
hfeng-pmm2	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9754	99.9671	99.9836	54.9478	6086	2	6086	1	1	100.0000
hfeng-pmm3	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9671	99.9671	99.9671	54.5909	6086	2	6086	2	2	100.0000
hfeng-pmm3	SNP	*	func_cds	*	99.9367	99.9669	99.9064	23.5356	18144	6	18141	17	0	0.0000
ckim-dragen	SNP	*	func_cds	*	99.5474	99.9669	99.1313	30.5099	18144	6	18144	159	1	0.6289
eyeh-varpipe	SNP	*	func_cds	*	98.2084	99.9669	96.5106	26.4105	18144	6	17950	649	1	0.1541
bgallagher-sentieon	SNP	*	func_cds	*	99.8899	99.9669	99.8129	24.1761	18144	6	18141	34	0	0.0000
hfeng-pmm1	SNP	tv	HG002complexvar	homalt	99.9763	99.9664	99.9863	22.9407	95079	32	95072	13	11	84.6154
hfeng-pmm2	SNP	tv	HG002complexvar	homalt	99.9732	99.9664	99.9800	23.0303	95079	32	95074	19	13	68.4211
bgallagher-sentieon	SNP	tv	*	*	99.8908	99.9655	99.8163	21.9055	969355	335	969269	1784	78	4.3722
eyeh-varpipe	SNP	ti	*	*	99.7598	99.9651	99.5553	19.0734	2084791	727	2061083	9206	307	3.3348
rpoplin-dv42	SNP	tv	*	homalt	99.9702	99.9650	99.9753	20.9652	376991	132	376970	93	51	54.8387
bgallagher-sentieon	SNP	ti	func_cds	het	99.8707	99.9647	99.7769	24.1158	8501	3	8499	19	0	0.0000
hfeng-pmm2	SNP	ti	func_cds	het	99.8707	99.9647	99.7769	23.7626	8501	3	8499	19	0	0.0000
ckim-dragen	SNP	ti	func_cds	het	99.3804	99.9647	98.8029	32.2466	8501	3	8501	103	1	0.9709
eyeh-varpipe	SNP	ti	func_cds	het	98.8564	99.9647	97.7724	26.7528	8501	3	8427	192	1	0.5208
dgrover-gatk	SNP	ti	func_cds	het	99.9118	99.9647	99.8590	25.0066	8501	3	8499	12	0	0.0000
egarrison-hhga	SNP	ti	func_cds	het	99.9236	99.9647	99.8825	23.1721	8501	3	8501	10	0	0.0000
dgrover-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9204	99.9646	99.8762	56.3643	11292	4	11292	14	13	92.8571
bgallagher-sentieon	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9204	99.9646	99.8762	56.3374	11292	4	11292	14	13	92.8571
astatham-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9292	99.9646	99.8938	56.3468	11292	4	11292	12	11	91.6667
ckim-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9204	99.9646	99.8762	56.3829	11292	4	11292	14	13	92.8571
hfeng-pmm3	SNP	tv	HG002complexvar	homalt	99.9769	99.9643	99.9895	22.8756	95077	34	95069	10	9	90.0000
ckim-dragen	SNP	*	func_cds	het	99.2748	99.9642	98.5949	34.9057	11157	4	11157	159	1	0.6289
dgrover-gatk	SNP	*	func_cds	het	99.8970	99.9642	99.8299	26.9739	11157	4	11154	19	0	0.0000
eyeh-varpipe	SNP	*	func_cds	het	97.1259	99.9642	94.4444	28.6508	11157	4	11033	649	1	0.1541
dgrover-gatk	SNP	ti	*	*	99.9570	99.9639	99.9500	17.7617	2084759	752	2084696	1042	126	12.0921
eyeh-varpipe	SNP	*	*	*	99.4670	99.9638	98.9751	20.3427	3053527	1107	2999712	31063	471	1.5163
eyeh-varpipe	SNP	ti	func_cds	*	99.2850	99.9637	98.6154	24.7463	13782	5	13675	192	1	0.5208
ckim-dragen	SNP	ti	func_cds	*	99.6097	99.9637	99.2582	28.1352	13782	5	13782	103	1	0.9709
rpoplin-dv42	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.8009	99.9637	99.6386	38.4564	2757	1	2757	10	2	20.0000

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