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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
8701-8750 / 86044 show all
raldana-dualsentieonSNPtv*homalt
99.9865
99.9801
99.9928
19.7814
377048753770422721
77.7778
hfeng-pmm1SNPtiHG002complexvarhomalt
99.9845
99.9798
99.9891
18.4732
193424391934162121
100.0000
jli-customSNPti*homalt
99.9866
99.9797
99.9934
15.9268
8028751638028705342
79.2453
bgallagher-sentieonSNPti*homalt
99.9867
99.9791
99.9944
15.8584
8028701688028614541
91.1111
bgallagher-sentieonSNP**homalt
99.9858
99.9781
99.9936
17.1960
117990225911798787666
86.8421
hfeng-pmm2SNP*func_cds*
99.9174
99.9780
99.8569
24.2548
18146418143260
0.0000
hfeng-pmm3SNPtiHG002complexvarhomalt
99.9848
99.9773
99.9922
18.4374
193419441934091515
100.0000
hfeng-pmm3SNPtvfunc_cds*
99.9428
99.9771
99.9085
28.1938
43701436940
0.0000
jli-customSNP**homalt
99.9850
99.9771
99.9928
17.2570
117989127011798758566
77.6471
jlack-gatkSNPtvfunc_cds*
98.8573
99.9771
97.7624
38.5704
4370143691000
0.0000
jli-customSNPtvfunc_cds*
99.8629
99.9771
99.7489
28.1332
437014370110
0.0000
raldana-dualsentieonSNPtvfunc_cds*
99.8743
99.9771
99.7716
27.8940
437014369100
0.0000
ndellapenna-hhgaSNPtvfunc_cds*
99.9314
99.9771
99.8857
28.0901
43701437050
0.0000
eyeh-varpipeSNPtvfunc_cds*
94.7737
99.9771
90.0850
32.1750
4370143434780
0.0000
dgrover-gatkSNPtvfunc_cds*
99.9085
99.9771
99.8400
29.8268
43701436970
0.0000
ckim-dragenSNPtvfunc_cds*
99.3521
99.9771
98.7347
37.1039
437014370560
0.0000
jlack-gatkSNPtifunc_cdshet
99.1254
99.9765
98.2886
33.6861
8502285001481
0.6757
bgallagher-sentieonSNPtv*homalt
99.9838
99.9759
99.9918
19.9074
377032913770173125
80.6452
hfeng-pmm2SNPtiHG002complexvarhomalt
99.9798
99.9757
99.9840
18.5051
193416471934073131
100.0000
dgrover-gatkSNPti*homalt
99.9851
99.9756
99.9946
15.9219
8028421968028334339
90.6977
hfeng-pmm1SNP*HG002complexvarhomalt
99.9818
99.9754
99.9882
20.0017
288503712884883432
94.1176
eyeh-varpipeSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.7046
99.9754
99.4352
43.5229
406414049235
21.7391
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.9875
99.9749
100.0000
34.3760
39861398600
dgrover-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.9875
99.9749
100.0000
34.7199
39861398600
rpoplin-dv42SNPti*homalt
99.9800
99.9747
99.9853
16.8487
802835203802832118106
89.8305
raldana-dualsentieonSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9614
99.9743
99.9486
59.3220
38861388622
100.0000
ckim-dragenSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9743
99.9743
99.9743
59.5233
38861388811
100.0000
hfeng-pmm1SNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9743
99.9743
99.9743
59.5146
38861388611
100.0000
jlack-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.4485
99.9742
98.9283
61.3587
387713877421
2.3810
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.7941
99.9742
99.6146
59.9671
387713877150
0.0000
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8455
99.9742
99.7171
60.4476
387713877110
0.0000
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8198
99.9742
99.6658
59.2542
387713877130
0.0000
dgrover-gatkSNP**homalt
99.9839
99.9740
99.9938
17.2643
117985430711798307363
86.3014
raldana-dualsentieonINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9381
99.9734
99.9027
56.1708
112933112931111
100.0000
ltrigg-rtg2SNPtisegduphomalt
99.7804
99.9734
99.5881
87.6176
7503274963131
100.0000
jlack-gatkSNP*func_cdshet
98.8875
99.9731
97.8251
36.6500
111583111552481
0.4032
hfeng-pmm2SNP*func_cdshet
99.8702
99.9731
99.7675
25.5047
11158311155260
0.0000
egarrison-hhgaSNP*func_cdshet
99.9239
99.9731
99.8747
24.7221
11158311158140
0.0000
bgallagher-sentieonSNP*func_cdshet
99.8344
99.9731
99.6961
26.0085
11158311155340
0.0000
hfeng-pmm3SNP*HG002complexvarhomalt
99.9822
99.9730
99.9913
19.9554
288496782884782524
96.0000
jli-customINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9319
99.9727
99.8911
50.1493
36651366844
100.0000
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9182
99.9727
99.8638
51.1578
36651366555
100.0000
bgallagher-sentieonINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.8910
99.9727
99.8094
51.1312
36651366577
100.0000
jmaeng-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.8366
99.9727
99.7008
51.3048
3665136651111
100.0000
ckim-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9318
99.9727
99.8910
51.2943
36651366544
100.0000
raldana-dualsentieonSNPtiHG002complexvarhomalt
99.9811
99.9726
99.9897
18.3281
193410531934012020
100.0000
hfeng-pmm2SNP*HG002complexvarhomalt
99.9776
99.9726
99.9827
20.0544
288495792884815044
88.0000
egarrison-hhgaSNP*func_cds*
99.9477
99.9725
99.9229
23.9159
18145518145140
0.0000
rpoplin-dv42SNP**homalt
99.9769
99.9716
99.9821
18.2100
11798263351179802211157
74.4076
jli-customSNPtv*homalt
99.9816
99.9716
99.9915
19.9541
3770161073770053224
75.0000