PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
8551-8600 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 35.5756 | 100.0000 | 21.6364 | 89.6259 | 1 | 0 | 513 | 1858 | 127 | 6.8353 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 38.3328 | 100.0000 | 23.7109 | 89.9572 | 1 | 0 | 584 | 1879 | 136 | 7.2379 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 35.5756 | 100.0000 | 21.6364 | 89.6259 | 1 | 0 | 513 | 1858 | 127 | 6.8353 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 80.4688 | 100.0000 | 67.3203 | 93.0926 | 1 | 0 | 206 | 100 | 19 | 19.0000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 73.0245 | 100.0000 | 57.5107 | 93.5296 | 1 | 0 | 134 | 99 | 18 | 18.1818 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 38.6341 | 100.0000 | 23.9420 | 83.0324 | 1 | 0 | 198 | 629 | 44 | 6.9952 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 35.0259 | 100.0000 | 21.2312 | 82.4631 | 1 | 0 | 169 | 627 | 43 | 6.8581 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 55.2239 | 100.0000 | 38.1443 | 82.3636 | 1 | 0 | 74 | 120 | 20 | 16.6667 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 49.7817 | 100.0000 | 33.1395 | 82.4847 | 1 | 0 | 57 | 115 | 16 | 13.9130 | |
| gduggal-snapvard | INDEL | C6_15 | * | * | 51.3896 | 100.0000 | 34.5801 | 85.2457 | 7 | 0 | 490 | 927 | 158 | 17.0442 | |
| gduggal-snapvard | INDEL | C6_15 | * | het | 48.6270 | 100.0000 | 32.1240 | 84.8018 | 7 | 0 | 425 | 898 | 137 | 15.2561 | |
| gduggal-snapvard | INDEL | C6_15 | HG002complexvar | * | 72.1017 | 100.0000 | 56.3743 | 72.3480 | 4 | 0 | 482 | 373 | 150 | 40.2145 | |
| gduggal-snapvard | INDEL | C6_15 | HG002complexvar | het | 70.5584 | 100.0000 | 54.5098 | 71.9266 | 4 | 0 | 417 | 348 | 129 | 37.0690 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 56.8750 | 100.0000 | 39.7380 | 88.6830 | 1 | 0 | 182 | 276 | 65 | 23.5507 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 55.2980 | 100.0000 | 38.2151 | 88.1796 | 1 | 0 | 167 | 270 | 61 | 22.5926 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.9130 | 1 | 0 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.7179 | 1 | 0 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9952 | 1 | 0 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9942 | 1 | 0 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | tech_badpromoters | het | 76.1905 | 100.0000 | 61.5385 | 51.8519 | 8 | 0 | 8 | 5 | 5 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 97.5904 | 3 | 0 | 3 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 98.2684 | 2 | 0 | 2 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 89.4737 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l150_m0_e0 | het | 86.9565 | 100.0000 | 76.9231 | 95.7096 | 20 | 0 | 20 | 6 | 6 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l150_m1_e0 | het | 86.6667 | 100.0000 | 76.4706 | 94.7639 | 39 | 0 | 39 | 12 | 11 | 91.6667 | |
| ghariani-varprowl | INDEL | D6_15 | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 98.4887 | 6 | 0 | 6 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l250_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 98.8439 | 4 | 0 | 4 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.0784 | 2 | 0 | 2 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l250_m1_e0 | het | 91.6667 | 100.0000 | 84.6154 | 97.7966 | 11 | 0 | 11 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.8272 | 5 | 0 | 5 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l250_m2_e0 | het | 93.3333 | 100.0000 | 87.5000 | 97.6190 | 14 | 0 | 14 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.4066 | 6 | 0 | 6 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l250_m2_e1 | het | 93.3333 | 100.0000 | 87.5000 | 97.6710 | 14 | 0 | 14 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.5484 | 6 | 0 | 6 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I16_PLUS | HG002compoundhet | homalt | 7.5000 | 100.0000 | 3.8961 | 67.2340 | 3 | 0 | 3 | 74 | 73 | 98.6486 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m0_e0 | het | 84.2105 | 100.0000 | 72.7273 | 81.0345 | 8 | 0 | 8 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l125_m0_e0 | het | 66.6667 | 100.0000 | 50.0000 | 84.6154 | 3 | 0 | 3 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l150_m0_e0 | het | 57.1429 | 100.0000 | 40.0000 | 84.8485 | 2 | 0 | 2 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l250_m1_e0 | * | 66.6667 | 100.0000 | 50.0000 | 95.2381 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l250_m1_e0 | het | 66.6667 | 100.0000 | 50.0000 | 94.7368 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l250_m2_e0 | * | 66.6667 | 100.0000 | 50.0000 | 95.6522 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l250_m2_e0 | het | 66.6667 | 100.0000 | 50.0000 | 95.0000 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l250_m2_e1 | * | 66.6667 | 100.0000 | 50.0000 | 95.9184 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l250_m2_e1 | het | 66.6667 | 100.0000 | 50.0000 | 95.3488 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 12.5000 | 100.0000 | 6.6667 | 88.9706 | 1 | 0 | 1 | 14 | 11 | 78.5714 | |
| ghariani-varprowl | INDEL | I1_5 | map_l250_m0_e0 | het | 88.2353 | 100.0000 | 78.9474 | 98.8527 | 15 | 0 | 15 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | I1_5 | tech_badpromoters | het | 84.2105 | 100.0000 | 72.7273 | 57.6923 | 8 | 0 | 8 | 3 | 3 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | func_cds | het | 87.2727 | 100.0000 | 77.4194 | 39.2157 | 24 | 0 | 24 | 7 | 7 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l250_m0_e0 | * | 66.6667 | 100.0000 | 50.0000 | 98.5185 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.7368 | 1 | 0 | 1 | 0 | 0 | ||