PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
6651-6700 / 86044 show all
hfeng-pmm2INDELD1_5map_l250_m2_e1het
95.6863
100.0000
91.7293
95.8044
1220122111
9.0909
hfeng-pmm2INDELD1_5map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
98.1250
30300
hfeng-pmm2INDELD1_5segduphomalt
100.0000
100.0000
100.0000
94.1176
359035900
hfeng-pmm2INDELD1_5segdupwithalt*
100.0000
100.0000
100.0000
99.9940
10100
hfeng-pmm2INDELD1_5segdupwithalthet
100.0000
100.0000
100.0000
99.9909
10100
hfeng-pmm2INDELD1_5tech_badpromotershetalt
100.0000
100.0000
100.0000
0.0000
20200
hfeng-pmm2INDELD1_5tech_badpromotershomalt
100.0000
100.0000
100.0000
43.7500
90900
hfeng-pmm2INDELD6_15HG002compoundhethomalt
47.5248
100.0000
31.1688
71.0526
240245352
98.1132
hfeng-pmm2INDELD6_15decoy*
100.0000
100.0000
100.0000
99.9024
10100
hfeng-pmm2INDELD6_15decoyhetalt
100.0000
100.0000
100.0000
99.1379
10100
hfeng-pmm2INDELD6_15func_cds*
100.0000
100.0000
100.0000
53.7634
4304300
hfeng-pmm2INDELD6_15func_cdshet
100.0000
100.0000
100.0000
50.0000
2902900
hfeng-pmm2INDELD6_15func_cdshetalt
100.0000
100.0000
100.0000
60.0000
20200
hfeng-pmm2INDELD6_15func_cdshomalt
100.0000
100.0000
100.0000
60.0000
1201200
hfeng-pmm2INDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
96.4912
60600
hfeng-pmm2INDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.2727
30300
hfeng-pmm2INDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.0000
20200
hfeng-pmm2INDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
97.5610
10100
hfeng-pmm2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
76.6304
4304300
hfeng-pmm2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
97.2973
40400
hfeng-pmm2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.9381
20200
hfeng-pmm2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
84.6154
20200
hfeng-pmm2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7333
100.0000
99.4681
58.4530
374037421
50.0000
hfeng-pmm2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.7093
100.0000
99.4203
56.2738
343034321
50.0000
hfeng-pmm2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
91.3043
20200
hfeng-pmm2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
92.3077
10100
hfeng-pmm2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
66.6667
10100
hfeng-pmm2INDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
62.2449
3703700
hfeng-pmm2INDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10homalt
100.0000
100.0000
100.0000
80.9278
7407400
hfeng-pmm2INDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.2126
90900
hfeng-pmm2INDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10homalt
92.3077
100.0000
85.7143
99.6897
60610
0.0000
hfeng-pmm2INDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
100.0000
100.0000
100.0000
32.3664
443044300
hfeng-pmm2INDELD6_15lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
32.2581
2102100
hfeng-pmm2INDELD6_15map_l125_m0_e0hetalt
100.0000
100.0000
100.0000
89.2857
60600
hfeng-pmm2INDELD6_15map_l125_m0_e0homalt
100.0000
100.0000
100.0000
91.7241
1201200
hfeng-pmm2INDELD6_15map_l150_m0_e0*
100.0000
100.0000
100.0000
94.0187
3203200
hfeng-pmm2INDELD6_15map_l150_m0_e0het
100.0000
100.0000
100.0000
94.6092
2002000
hfeng-pmm2INDELD6_15map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
89.1304
50500
hfeng-pmm2INDELD6_15map_l150_m0_e0homalt
100.0000
100.0000
100.0000
94.0678
70700
hfeng-pmm2INDELD6_15map_l150_m1_e0het
100.0000
100.0000
100.0000
93.6995
3903900
hfeng-pmm2INDELD6_15map_l150_m1_e0hetalt
100.0000
100.0000
100.0000
90.2439
80800
hfeng-pmm2INDELD6_15map_l150_m2_e0het
100.0000
100.0000
100.0000
93.3140
4604600
hfeng-pmm2INDELD6_15map_l150_m2_e0hetalt
100.0000
100.0000
100.0000
91.6667
80800
hfeng-pmm2INDELD6_15map_l150_m2_e1het
100.0000
100.0000
100.0000
93.3144
4704700
hfeng-pmm2INDELD6_15map_l250_m0_e0*
100.0000
100.0000
100.0000
97.8723
60600
hfeng-pmm2INDELD6_15map_l250_m0_e0het
100.0000
100.0000
100.0000
97.9275
40400
hfeng-pmm2INDELD6_15map_l250_m0_e0homalt
100.0000
100.0000
100.0000
97.0149
20200
hfeng-pmm2INDELD6_15map_l250_m1_e0*
100.0000
100.0000
100.0000
96.5184
1801800
hfeng-pmm2INDELD6_15map_l250_m1_e0het
100.0000
100.0000
100.0000
96.9444
1101100
hfeng-pmm2INDELD6_15map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
95.7447
20200