PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
6001-6050 / 86044 show all
hfeng-pmm1INDELI1_5map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
98.4375
20200
hfeng-pmm1INDELI1_5map_l250_m2_e0homalt
97.8261
100.0000
95.7447
94.3713
4504522
100.0000
hfeng-pmm1INDELI1_5map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
98.4615
20200
hfeng-pmm1INDELI1_5map_l250_m2_e1homalt
97.8723
100.0000
95.8333
94.4121
4604622
100.0000
hfeng-pmm1INDELI1_5tech_badpromoters*
100.0000
100.0000
100.0000
53.1915
2202200
hfeng-pmm1INDELI1_5tech_badpromotershet
100.0000
100.0000
100.0000
38.4615
80800
hfeng-pmm1INDELI1_5tech_badpromotershetalt
100.0000
100.0000
100.0000
50.0000
10100
hfeng-pmm1INDELI1_5tech_badpromotershomalt
100.0000
100.0000
100.0000
59.3750
1301300
hfeng-pmm1INDELI6_15HG002compoundhethomalt
23.0483
100.0000
13.0252
62.1019
31031207206
99.5169
hfeng-pmm1INDELI6_15func_cdshet
100.0000
100.0000
100.0000
38.4615
2402400
hfeng-pmm1INDELI6_15func_cdshomalt
100.0000
100.0000
100.0000
40.0000
1501500
hfeng-pmm1INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
97.2973
100.0000
94.7368
68.3333
3603622
100.0000
hfeng-pmm1INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.4595
100.0000
98.9247
67.9310
9209211
100.0000
hfeng-pmm1INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
68.3721
6806800
hfeng-pmm1INDELI6_15lowcmp_SimpleRepeat_diTR_11to50homalt
98.0769
100.0000
96.2264
77.0893
153015365
83.3333
hfeng-pmm1INDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10homalt
100.0000
100.0000
100.0000
81.0078
4904900
hfeng-pmm1INDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.8454
20200
hfeng-pmm1INDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.4012
20200
hfeng-pmm1INDELI6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
99.5392
100.0000
99.0826
64.4372
216021622
100.0000
hfeng-pmm1INDELI6_15lowcmp_SimpleRepeat_triTR_11to50homalt
100.0000
100.0000
100.0000
61.4379
5905900
hfeng-pmm1INDELI6_15lowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
10000
hfeng-pmm1INDELI6_15map_l150_m1_e0hetalt
100.0000
100.0000
100.0000
92.8571
30300
hfeng-pmm1INDELI6_15map_l150_m2_e0hetalt
100.0000
100.0000
100.0000
94.0000
30300
hfeng-pmm1INDELI6_15map_l150_m2_e1hetalt
100.0000
100.0000
100.0000
94.2308
30300
hfeng-pmm1INDELI6_15segduphomalt
100.0000
100.0000
100.0000
91.8966
4704700
hfeng-pmm1INDELI6_15tech_badpromoters*
100.0000
100.0000
100.0000
53.5714
1301300
hfeng-pmm1INDELI6_15tech_badpromotershet
100.0000
100.0000
100.0000
53.3333
70700
hfeng-pmm1INDELI6_15tech_badpromotershetalt
100.0000
100.0000
100.0000
50.0000
30300
hfeng-pmm1INDELI6_15tech_badpromotershomalt
100.0000
100.0000
100.0000
57.1429
30300
hfeng-pmm1SNP*func_cdshetalt
100.0000
100.0000
100.0000
62.9630
1001000
hfeng-pmm1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
94.0945
1501500
hfeng-pmm1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
88.8889
10100
hfeng-pmm1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
83.3333
10100
hfeng-pmm1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
57.8096
13830138300
hfeng-pmm1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
91.6667
20200
hfeng-pmm1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.0000
20200
hfeng-pmm1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
96.3415
30300
hfeng-pmm1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
94.0945
1501500
hfeng-pmm1SNP*lowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
96.1538
10100
hfeng-pmm1SNP*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
68.7500
50500
hfeng-pmm1SNP*lowcmp_SimpleRepeat_quadTR_11to50hetalt
90.9091
100.0000
83.3333
66.6667
50511
100.0000
hfeng-pmm1SNP*lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
96.9697
20200
hfeng-pmm1SNP*map_l100_m0_e0hetalt
100.0000
100.0000
100.0000
79.4872
1601600
hfeng-pmm1SNP*map_l100_m1_e0hetalt
100.0000
100.0000
100.0000
76.8362
4104100
hfeng-pmm1SNP*map_l100_m2_e0hetalt
100.0000
100.0000
100.0000
78.6802
4204200
hfeng-pmm1SNP*map_l100_m2_e1hetalt
100.0000
100.0000
100.0000
78.2828
4304300
hfeng-pmm1SNP*map_l125_m0_e0hetalt
100.0000
100.0000
100.0000
85.0000
90900
hfeng-pmm1SNP*map_l125_m1_e0hetalt
100.0000
100.0000
100.0000
77.6119
3003000
hfeng-pmm1SNP*map_l125_m2_e0hetalt
100.0000
100.0000
100.0000
80.7692
3003000
hfeng-pmm1SNP*map_l125_m2_e1hetalt
100.0000
100.0000
100.0000
80.7692
3003000