PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5501-5550 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | I16_PLUS | map_l125_m0_e0 | het | 85.7143 | 100.0000 | 75.0000 | 93.3333 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.5075 | 2 | 0 | 2 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.3146 | 3 | 0 | 3 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 85.7143 | 100.0000 | 75.0000 | 97.9275 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 85.7143 | 100.0000 | 75.0000 | 97.9275 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l150_m0_e0 | * | 88.8889 | 100.0000 | 80.0000 | 97.0588 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l150_m0_e0 | het | 80.0000 | 100.0000 | 66.6667 | 93.7500 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.1525 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.1013 | 3 | 0 | 3 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.2036 | 3 | 0 | 3 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.2143 | 3 | 0 | 3 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_l250_m1_e0 | * | 66.6667 | 100.0000 | 50.0000 | 98.8439 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l250_m1_e0 | het | 66.6667 | 100.0000 | 50.0000 | 96.3636 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l250_m2_e0 | * | 66.6667 | 100.0000 | 50.0000 | 98.9011 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l250_m2_e0 | het | 66.6667 | 100.0000 | 50.0000 | 96.5517 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l250_m2_e1 | * | 66.6667 | 100.0000 | 50.0000 | 98.9362 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l250_m2_e1 | het | 66.6667 | 100.0000 | 50.0000 | 96.6667 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_siren | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.4951 | 16 | 0 | 17 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | segdup | * | 98.9474 | 100.0000 | 97.9167 | 93.7419 | 47 | 0 | 47 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | segdup | het | 100.0000 | 100.0000 | 100.0000 | 93.6842 | 24 | 0 | 24 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.7742 | 4 | 0 | 4 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | segdup | homalt | 97.4359 | 100.0000 | 95.0000 | 92.3954 | 19 | 0 | 19 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 71.4286 | 4 | 0 | 4 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 2 | 0 | 2 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 2 | 0 | 2 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 32.8358 | 180 | 0 | 180 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 39.1753 | 59 | 0 | 59 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 2 | 0 | 2 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 29.5858 | 119 | 0 | 119 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.8498 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.5517 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.8445 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.8955 | 100.0000 | 99.7912 | 75.1685 | 478 | 0 | 478 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8557 | 100.0000 | 99.7118 | 78.4739 | 346 | 0 | 346 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.3854 | 100.0000 | 98.7784 | 71.6337 | 564 | 0 | 566 | 7 | 7 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8969 | 100.0000 | 99.7940 | 63.6602 | 968 | 0 | 969 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.9932 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.9853 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 50.0000 | 100.0000 | 33.3333 | 94.8718 | 1 | 0 | 2 | 4 | 3 | 75.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8131 | 100.0000 | 99.6269 | 65.1948 | 267 | 0 | 267 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 80.0000 | 100.0000 | 66.6667 | 89.6552 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1935 | 9 | 0 | 9 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | map_l100_m0_e0 | homalt | 99.0476 | 100.0000 | 98.1132 | 79.0514 | 208 | 0 | 208 | 4 | 3 | 75.0000 | |
| jli-custom | INDEL | I1_5 | map_l100_m1_e0 | homalt | 99.6154 | 100.0000 | 99.2337 | 79.2939 | 518 | 0 | 518 | 4 | 3 | 75.0000 | |
| jli-custom | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.6248 | 100.0000 | 99.2523 | 80.8106 | 531 | 0 | 531 | 4 | 3 | 75.0000 | |
| jli-custom | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.6310 | 100.0000 | 99.2647 | 80.8922 | 540 | 0 | 540 | 4 | 3 | 75.0000 | |
| jli-custom | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.5812 | 4 | 0 | 4 | 0 | 0 | ||