PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53651-53700 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 1.6949 | 0.0000 | 0.0000 | 1 | 58 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 1.6949 | 0.0000 | 0.0000 | 1 | 58 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 1.6895 | 0.0000 | 0.0000 | 37 | 2153 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | HG002complexvar | hetalt | 0.0000 | 1.6782 | 0.0000 | 0.0000 | 17 | 996 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I16_PLUS | HG002complexvar | het | 3.1923 | 1.6541 | 45.5157 | 59.5648 | 11 | 654 | 203 | 243 | 141 | 58.0247 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 1.6229 | 0.0000 | 0.0000 | 21 | 1273 | 0 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 3.1746 | 1.6129 | 100.0000 | 99.9994 | 2 | 122 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | map_l100_m1_e0 | hetalt | 0.0000 | 1.6129 | 0.0000 | 0.0000 | 2 | 122 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 1.6033 | 0.0000 | 0.0000 | 43 | 2639 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 1.6026 | 0.0000 | 0.0000 | 50 | 3070 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | map_l100_m2_e0 | hetalt | 0.0000 | 1.6000 | 0.0000 | 0.0000 | 2 | 123 | 0 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 3.1209 | 1.5974 | 67.3913 | 86.5889 | 20 | 1232 | 31 | 15 | 10 | 66.6667 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 3.1212 | 1.5945 | 73.3333 | 80.5195 | 7 | 432 | 11 | 4 | 4 | 100.0000 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 1.5915 | 0.0000 | 0.0000 | 18 | 1113 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | HG002complexvar | hetalt | 0.0000 | 1.5795 | 0.0000 | 0.0000 | 16 | 997 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 1.5601 | 0.0000 | 0.0000 | 10 | 631 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I6_15 | HG002compoundhet | * | 2.2462 | 1.5497 | 4.0797 | 35.3639 | 136 | 8640 | 129 | 3033 | 2934 | 96.7359 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 1.5461 | 0.0000 | 0.0000 | 25 | 1592 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | * | segdup | hetalt | 0.0000 | 1.5385 | 0.0000 | 0.0000 | 2 | 128 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 1.5360 | 0.0000 | 0.0000 | 39 | 2500 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 2.9557 | 1.5228 | 50.0000 | 87.7551 | 3 | 194 | 3 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 1.5161 | 0.0000 | 0.0000 | 25 | 1624 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | * | map_l100_m2_e1 | hetalt | 0.0000 | 1.5152 | 0.0000 | 0.0000 | 2 | 130 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | map_l100_m2_e1 | hetalt | 0.0000 | 1.5152 | 0.0000 | 0.0000 | 2 | 130 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | map_l100_m2_e1 | hetalt | 0.0000 | 1.5152 | 0.0000 | 0.0000 | 2 | 130 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 1.5129 | 0.0000 | 0.0000 | 40 | 2604 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 2.8165 | 1.5003 | 22.9630 | 60.5263 | 29 | 1904 | 31 | 104 | 70 | 67.3077 | |
| gduggal-bwavard | INDEL | I16_PLUS | HG002complexvar | hetalt | 0.0000 | 1.4925 | 0.0000 | 0.0000 | 5 | 330 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 0.0000 | 1.4706 | 0.0000 | 0.0000 | 1 | 67 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 1.4706 | 0.0000 | 0.0000 | 1 | 67 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 0.0000 | 1.4706 | 0.0000 | 0.0000 | 1 | 67 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 1.4706 | 0.0000 | 0.0000 | 1 | 67 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 2.7557 | 1.4642 | 23.3645 | 66.5102 | 47 | 3163 | 50 | 164 | 113 | 68.9024 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 1.4493 | 0.0000 | 0.0000 | 1 | 68 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 1.4493 | 0.0000 | 0.0000 | 1 | 68 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 2.7260 | 1.4416 | 25.0000 | 74.2765 | 19 | 1299 | 20 | 60 | 43 | 71.6667 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 1.4337 | 0.0000 | 0.0000 | 4 | 275 | 0 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 2.7934 | 1.4257 | 68.7500 | 77.7778 | 7 | 484 | 11 | 5 | 3 | 60.0000 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 1.4180 | 0.0000 | 0.0000 | 50 | 3476 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 1.4180 | 0.0000 | 0.0000 | 50 | 3476 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 1.4147 | 0.0000 | 0.0000 | 16 | 1115 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 2.6388 | 1.3951 | 24.3243 | 79.2910 | 25 | 1767 | 27 | 84 | 48 | 57.1429 | |
| ghariani-varprowl | INDEL | I6_15 | map_siren | hetalt | 0.0000 | 1.3889 | 0.0000 | 0.0000 | 1 | 71 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I6_15 | map_siren | hetalt | 0.0000 | 1.3889 | 0.0000 | 0.0000 | 1 | 71 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | map_siren | hetalt | 0.0000 | 1.3889 | 0.0000 | 0.0000 | 1 | 71 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 0.0000 | 1.3699 | 0.0000 | 0.0000 | 1 | 72 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 0.0000 | 1.3699 | 0.0000 | 0.0000 | 1 | 72 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I16_PLUS | HG002compoundhet | * | 1.7907 | 1.3532 | 2.6460 | 56.7653 | 29 | 2114 | 29 | 1067 | 1059 | 99.2502 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 1.3514 | 0.0000 | 0.0000 | 1 | 73 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | HG002compoundhet | hetalt | 0.0000 | 1.3485 | 0.0000 | 0.0000 | 26 | 1902 | 0 | 0 | 0 | ||