PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
52951-53000 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | I6_15 | map_l150_m2_e1 | homalt | 22.2222 | 12.5000 | 100.0000 | 98.5915 | 1 | 7 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | func_cds | het | 20.0000 | 12.5000 | 50.0000 | 77.7778 | 1 | 7 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 21.9561 | 12.5000 | 90.1639 | 55.1471 | 109 | 763 | 110 | 12 | 10 | 83.3333 | |
| anovak-vg | INDEL | I16_PLUS | map_l100_m0_e0 | het | 22.2222 | 12.5000 | 100.0000 | 80.0000 | 1 | 7 | 1 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | map_l125_m0_e0 | hetalt | 22.2222 | 12.5000 | 100.0000 | 97.2222 | 1 | 7 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | HG002compoundhet | homalt | 0.4762 | 12.5000 | 0.2427 | 19.8444 | 1 | 7 | 2 | 822 | 821 | 99.8783 | |
| ckim-isaac | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 22.2222 | 12.5000 | 100.0000 | 95.1220 | 2 | 14 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 22.2222 | 12.5000 | 100.0000 | 95.2381 | 2 | 14 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | map_l150_m2_e0 | het | 21.0526 | 12.5000 | 66.6667 | 97.5806 | 2 | 14 | 2 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l150_m2_e1 | het | 21.0526 | 12.5000 | 66.6667 | 97.6190 | 2 | 14 | 2 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I6_15 | map_l150_m2_e1 | homalt | 22.2222 | 12.5000 | 100.0000 | 97.8723 | 1 | 7 | 1 | 0 | 0 | ||
| ckim-vqsr | SNP | * | map_l100_m0_e0 | hetalt | 22.2222 | 12.5000 | 100.0000 | 98.1308 | 2 | 14 | 2 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | map_l100_m0_e0 | hetalt | 22.2222 | 12.5000 | 100.0000 | 98.1308 | 2 | 14 | 2 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 18.3933 | 12.4471 | 35.2174 | 39.3140 | 147 | 1034 | 162 | 298 | 265 | 88.9262 | |
| anovak-vg | INDEL | I16_PLUS | * | het | 20.3076 | 12.3988 | 56.0773 | 46.0104 | 337 | 2381 | 406 | 318 | 57 | 17.9245 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 21.7822 | 12.3499 | 92.2018 | 54.2977 | 72 | 511 | 201 | 17 | 17 | 100.0000 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 15.8746 | 12.3386 | 22.2513 | 50.7732 | 86 | 611 | 85 | 297 | 292 | 98.3165 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 21.6505 | 12.3145 | 89.5161 | 61.9632 | 448 | 3190 | 333 | 39 | 39 | 100.0000 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 19.9827 | 12.2677 | 53.8462 | 92.1805 | 33 | 236 | 28 | 24 | 13 | 54.1667 | |
| anovak-vg | INDEL | I16_PLUS | map_siren | het | 21.4286 | 12.2449 | 85.7143 | 75.8621 | 6 | 43 | 6 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D6_15 | segdup | hetalt | 0.0000 | 12.2449 | 0.0000 | 0.0000 | 6 | 43 | 0 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 19.0476 | 12.1951 | 43.4783 | 96.2480 | 10 | 72 | 10 | 13 | 4 | 30.7692 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 18.1984 | 12.1359 | 36.3636 | 91.4286 | 25 | 181 | 24 | 42 | 24 | 57.1429 | |
| anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 19.5313 | 12.1359 | 50.0000 | 45.6954 | 25 | 181 | 41 | 41 | 38 | 92.6829 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 20.2653 | 12.1269 | 61.6162 | 73.8786 | 65 | 471 | 61 | 38 | 4 | 10.5263 | |
| gduggal-snapplat | INDEL | D6_15 | map_siren | hetalt | 21.6216 | 12.1212 | 100.0000 | 96.0265 | 12 | 87 | 12 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 18.5714 | 12.0370 | 40.6250 | 54.2857 | 13 | 95 | 13 | 19 | 3 | 15.7895 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 14.2012 | 12.0000 | 17.3913 | 88.3838 | 3 | 22 | 4 | 19 | 3 | 15.7895 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 20.8696 | 12.0000 | 80.0000 | 51.2195 | 15 | 110 | 16 | 4 | 3 | 75.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l150_m1_e0 | * | 20.6897 | 12.0000 | 75.0000 | 97.3856 | 3 | 22 | 3 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l150_m2_e0 | * | 20.6897 | 12.0000 | 75.0000 | 97.8022 | 3 | 22 | 3 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 15.3846 | 12.0000 | 21.4286 | 44.0000 | 3 | 22 | 3 | 11 | 9 | 81.8182 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 20.0000 | 12.0000 | 60.0000 | 70.5882 | 3 | 22 | 3 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 20.0000 | 12.0000 | 60.0000 | 83.3333 | 3 | 22 | 3 | 2 | 1 | 50.0000 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 21.0383 | 11.9565 | 87.5000 | 38.4615 | 11 | 81 | 14 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 18.0539 | 11.9565 | 36.8421 | 58.6957 | 11 | 81 | 7 | 12 | 7 | 58.3333 | |
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 17.5930 | 11.9082 | 33.6634 | 40.2367 | 83 | 614 | 102 | 201 | 155 | 77.1144 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 19.8805 | 11.8959 | 60.4651 | 91.9021 | 32 | 237 | 26 | 17 | 11 | 64.7059 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 21.2121 | 11.8644 | 100.0000 | 33.3333 | 7 | 52 | 12 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 18.4211 | 11.8644 | 41.1765 | 77.0270 | 7 | 52 | 7 | 10 | 4 | 40.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l100_m1_e0 | het | 18.3007 | 11.8644 | 40.0000 | 93.4211 | 7 | 52 | 6 | 9 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D16_PLUS | HG002compoundhet | het | 17.8807 | 11.8519 | 36.3934 | 44.8463 | 48 | 357 | 111 | 194 | 186 | 95.8763 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 18.4985 | 11.8280 | 42.4242 | 51.4706 | 22 | 164 | 70 | 95 | 84 | 88.4211 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 20.6573 | 11.7647 | 84.6154 | 90.7801 | 12 | 90 | 11 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 20.6573 | 11.7647 | 84.6154 | 90.8451 | 12 | 90 | 11 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_siren | homalt | 20.5128 | 11.7647 | 80.0000 | 90.1961 | 4 | 30 | 4 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 19.2271 | 11.7330 | 53.2189 | 75.6912 | 283 | 2129 | 248 | 218 | 182 | 83.4862 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 18.2169 | 11.6667 | 41.5385 | 87.5836 | 56 | 424 | 54 | 76 | 61 | 80.2632 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 19.6078 | 11.6279 | 62.5000 | 75.7576 | 10 | 76 | 5 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 20.4082 | 11.6279 | 83.3333 | 78.5714 | 5 | 38 | 5 | 1 | 1 | 100.0000 | |