PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
5251-5300 / 86044 show all
dgrover-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
83.3333
10100
dgrover-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.9650
100.0000
99.9300
27.1057
14270142711
100.0000
dgrover-gatkSNPtilowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
94.5205
80800
dgrover-gatkSNPtilowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
92.8571
60600
dgrover-gatkSNPtilowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
96.7742
20200
dgrover-gatkSNPtimap_l100_m0_e0hetalt
100.0000
100.0000
100.0000
65.0000
1401400
dgrover-gatkSNPtimap_l100_m1_e0hetalt
100.0000
100.0000
100.0000
68.8172
2902900
dgrover-gatkSNPtimap_l100_m2_e0hetalt
100.0000
100.0000
100.0000
70.5882
3003000
dgrover-gatkSNPtimap_l100_m2_e1hetalt
100.0000
100.0000
100.0000
69.9029
3103100
dgrover-gatkSNPtimap_l125_m0_e0hetalt
100.0000
100.0000
100.0000
71.4286
80800
dgrover-gatkSNPtimap_l125_m1_e0hetalt
100.0000
100.0000
100.0000
64.1791
2402400
dgrover-gatkSNPtimap_l125_m2_e0hetalt
100.0000
100.0000
100.0000
70.7317
2402400
dgrover-gatkSNPtimap_l125_m2_e1hetalt
100.0000
100.0000
100.0000
70.7317
2402400
dgrover-gatkSNPtimap_l150_m0_e0hetalt
100.0000
100.0000
100.0000
85.0000
30300
dgrover-gatkSNPtimap_l150_m1_e0hetalt
100.0000
100.0000
100.0000
70.0000
1501500
dgrover-gatkSNPtimap_l150_m2_e0hetalt
100.0000
100.0000
100.0000
74.5763
1501500
dgrover-gatkSNPtimap_l150_m2_e1hetalt
100.0000
100.0000
100.0000
74.5763
1501500
dgrover-gatkSNPtimap_l250_m1_e0hetalt
100.0000
100.0000
100.0000
84.0000
40400
dgrover-gatkSNPtimap_l250_m2_e0hetalt
100.0000
100.0000
100.0000
82.1429
50500
dgrover-gatkSNPtimap_l250_m2_e1hetalt
100.0000
100.0000
100.0000
82.1429
50500
dgrover-gatkSNPtisegduphetalt
100.0000
100.0000
100.0000
98.6207
20200
dgrover-gatkSNPtitech_badpromotershomalt
98.7952
100.0000
97.6190
42.4658
4104111
100.0000
dgrover-gatkSNPtvfunc_cdshetalt
100.0000
100.0000
100.0000
58.3333
1001000
dgrover-gatkSNPtvfunc_cdshomalt
100.0000
100.0000
100.0000
24.6351
17040170400
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
87.5000
1501500
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
46.0762
481048100
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
80.0000
10100
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
62.1570
786078600
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
75.0000
10100
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
67.5124
525052500
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
91.3043
20200
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.0000
20200
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
93.1818
30300
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
87.5000
1501500
dgrover-gatkSNPtvlowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
95.8333
10100
dgrover-gatkSNPtvlowcmp_SimpleRepeat_diTR_51to200homalt
100.0000
100.0000
100.0000
95.3368
90900
dgrover-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
70.5882
50500
dgrover-gatkSNPtvlowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
64.2857
50500
dgrover-gatkSNPtvlowcmp_SimpleRepeat_quadTR_51to200homalt
100.0000
100.0000
100.0000
93.3333
60600
dgrover-gatkSNPtvlowcmp_SimpleRepeat_triTR_11to50het
99.7664
100.0000
99.5338
39.4410
213802135102
20.0000
dgrover-gatkSNPtvlowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
98.5714
10100
dgrover-gatkSNPtvlowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
98.2456
10100
dgrover-gatkSNPtvmap_l100_m0_e0hetalt
100.0000
100.0000
100.0000
69.8113
1601600
dgrover-gatkSNPtvmap_l125_m0_e0hetalt
100.0000
100.0000
100.0000
77.5000
90900
dgrover-gatkSNPtvmap_l150_m0_e0hetalt
100.0000
100.0000
100.0000
90.3226
30300
dgrover-gatkSNPtvmap_l250_m1_e0hetalt
100.0000
100.0000
100.0000
90.6977
40400
dgrover-gatkSNPtvmap_l250_m2_e0hetalt
100.0000
100.0000
100.0000
90.0000
50500
dgrover-gatkSNPtvmap_l250_m2_e1hetalt
100.0000
100.0000
100.0000
90.0000
50500
dgrover-gatkSNPtvsegduphetalt
100.0000
100.0000
100.0000
96.8750
70700
egarrison-hhgaINDEL*decoyhomalt
100.0000
100.0000
100.0000
99.9340
30300