PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
52401-52450 / 86044 show all | |||||||||||||||
| asubramanian-gatk | SNP | ti | map_l250_m2_e0 | * | 33.5713 | 20.1877 | 99.6059 | 98.2299 | 1011 | 3997 | 1011 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 29.6749 | 20.1610 | 56.1914 | 69.4731 | 601 | 2380 | 599 | 467 | 448 | 95.9315 | |
| asubramanian-gatk | SNP | ti | map_l250_m0_e0 | het | 33.4817 | 20.1285 | 99.4709 | 99.1011 | 188 | 746 | 188 | 1 | 1 | 100.0000 | |
| mlin-fermikit | SNP | tv | map_l250_m0_e0 | het | 33.2370 | 20.1049 | 95.8333 | 85.2399 | 115 | 457 | 115 | 5 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | tv | map_l150_m2_e1 | homalt | 33.4408 | 20.0774 | 100.0000 | 92.6353 | 830 | 3304 | 830 | 0 | 0 | ||
| ckim-vqsr | SNP | ti | map_l150_m0_e0 | homalt | 33.4238 | 20.0652 | 100.0000 | 93.2216 | 554 | 2207 | 554 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | map_l150_m1_e0 | homalt | 33.4015 | 20.0491 | 100.0000 | 91.6220 | 1469 | 5858 | 1469 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 20.0155 | 0.0000 | 0.0000 | 259 | 1035 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | * | func_cds | hetalt | 0.0000 | 20.0000 | 0.0000 | 0.0000 | 1 | 4 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | map_l125_m1_e0 | * | 27.2727 | 20.0000 | 42.8571 | 80.5556 | 3 | 12 | 3 | 4 | 4 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l125_m2_e0 | * | 26.0870 | 20.0000 | 37.5000 | 83.6735 | 3 | 12 | 3 | 5 | 4 | 80.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l125_m2_e1 | * | 26.0870 | 20.0000 | 37.5000 | 83.6735 | 3 | 12 | 3 | 5 | 4 | 80.0000 | |
| asubramanian-gatk | SNP | tv | map_l250_m2_e0 | hetalt | 33.3333 | 20.0000 | 100.0000 | 98.5915 | 1 | 4 | 1 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_l250_m2_e1 | hetalt | 33.3333 | 20.0000 | 100.0000 | 98.5915 | 1 | 4 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | segdup | hetalt | 0.0000 | 20.0000 | 0.0000 | 0.0000 | 9 | 36 | 0 | 0 | 0 | ||
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 20.0000 | 0.0000 | 0.0000 | 1 | 4 | 0 | 0 | 0 | ||
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 20.0000 | 0.0000 | 0.0000 | 1 | 4 | 0 | 0 | 0 | ||
| anovak-vg | SNP | * | map_l250_m2_e0 | hetalt | 0.0000 | 20.0000 | 0.0000 | 0.0000 | 1 | 4 | 0 | 0 | 0 | ||
| anovak-vg | SNP | * | map_l250_m2_e1 | hetalt | 0.0000 | 20.0000 | 0.0000 | 0.0000 | 1 | 4 | 0 | 0 | 0 | ||
| anovak-vg | SNP | ti | map_l250_m2_e0 | hetalt | 0.0000 | 20.0000 | 0.0000 | 0.0000 | 1 | 4 | 0 | 0 | 0 | ||
| anovak-vg | SNP | ti | map_l250_m2_e1 | hetalt | 0.0000 | 20.0000 | 0.0000 | 0.0000 | 1 | 4 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 20.0000 | 0.0000 | 0.0000 | 1 | 4 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 20.0000 | 0.0000 | 0.0000 | 1 | 4 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | map_l250_m2_e0 | hetalt | 0.0000 | 20.0000 | 0.0000 | 0.0000 | 1 | 4 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | map_l250_m2_e1 | hetalt | 0.0000 | 20.0000 | 0.0000 | 0.0000 | 1 | 4 | 0 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | map_l250_m2_e0 | hetalt | 33.3333 | 20.0000 | 100.0000 | 98.5915 | 1 | 4 | 1 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | map_l250_m2_e1 | hetalt | 33.3333 | 20.0000 | 100.0000 | 98.5915 | 1 | 4 | 1 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | map_l250_m2_e0 | hetalt | 33.3333 | 20.0000 | 100.0000 | 97.5000 | 1 | 4 | 1 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | map_l250_m2_e1 | hetalt | 33.3333 | 20.0000 | 100.0000 | 97.5000 | 1 | 4 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | map_l250_m0_e0 | het | 31.5789 | 20.0000 | 75.0000 | 95.5556 | 3 | 12 | 3 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 28.5714 | 20.0000 | 50.0000 | 77.7778 | 1 | 4 | 1 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 28.8000 | 20.0000 | 51.4286 | 92.7835 | 19 | 76 | 18 | 17 | 3 | 17.6471 | |
| ciseli-custom | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 25.0000 | 20.0000 | 33.3333 | 90.3226 | 1 | 4 | 1 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 25.0000 | 20.0000 | 33.3333 | 91.4286 | 1 | 4 | 1 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 25.0000 | 20.0000 | 33.3333 | 91.8919 | 1 | 4 | 1 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m0_e0 | * | 31.5789 | 20.0000 | 75.0000 | 96.2264 | 3 | 12 | 3 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m1_e0 | homalt | 30.0000 | 20.0000 | 60.0000 | 91.3793 | 3 | 12 | 3 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m2_e0 | homalt | 30.0000 | 20.0000 | 60.0000 | 92.7536 | 3 | 12 | 3 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m2_e1 | homalt | 30.0000 | 20.0000 | 60.0000 | 92.8571 | 3 | 12 | 3 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l150_m1_e0 | het | 33.3333 | 20.0000 | 100.0000 | 97.1429 | 3 | 12 | 3 | 0 | 0 | ||
| ciseli-custom | INDEL | I6_15 | map_l150_m2_e0 | het | 33.3333 | 20.0000 | 100.0000 | 97.5806 | 3 | 12 | 3 | 0 | 0 | ||
| ckim-gatk | SNP | * | map_l250_m2_e0 | hetalt | 33.3333 | 20.0000 | 100.0000 | 99.2366 | 1 | 4 | 1 | 0 | 0 | ||
| ckim-gatk | SNP | * | map_l250_m2_e1 | hetalt | 33.3333 | 20.0000 | 100.0000 | 99.2366 | 1 | 4 | 1 | 0 | 0 | ||
| ckim-gatk | SNP | ti | map_l250_m2_e0 | hetalt | 33.3333 | 20.0000 | 100.0000 | 98.7654 | 1 | 4 | 1 | 0 | 0 | ||
| ckim-gatk | SNP | ti | map_l250_m2_e1 | hetalt | 33.3333 | 20.0000 | 100.0000 | 98.7654 | 1 | 4 | 1 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l250_m2_e0 | hetalt | 33.3333 | 20.0000 | 100.0000 | 99.2366 | 1 | 4 | 1 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l250_m2_e1 | hetalt | 33.3333 | 20.0000 | 100.0000 | 99.2366 | 1 | 4 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 32.2581 | 20.0000 | 83.3333 | 93.9394 | 5 | 20 | 5 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 33.3333 | 20.0000 | 100.0000 | 93.3333 | 1 | 4 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 33.3333 | 20.0000 | 100.0000 | 94.4444 | 1 | 4 | 1 | 0 | 0 | ||