PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
52251-52300 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 33.4992 | 22.3466 | 66.8742 | 80.9806 | 539 | 1873 | 537 | 266 | 233 | 87.5940 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 26.2530 | 22.2973 | 31.9149 | 42.5829 | 33 | 115 | 105 | 224 | 205 | 91.5179 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 32.7016 | 22.2672 | 61.5385 | 82.5000 | 55 | 192 | 56 | 35 | 29 | 82.8571 | |
| ckim-vqsr | SNP | ti | map_l250_m0_e0 | homalt | 36.3977 | 22.2477 | 100.0000 | 97.9282 | 97 | 339 | 97 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 29.8168 | 22.2403 | 45.2229 | 54.6898 | 137 | 479 | 142 | 172 | 160 | 93.0233 | |
| gduggal-snapplat | INDEL | D6_15 | map_l250_m1_e0 | * | 36.3636 | 22.2222 | 100.0000 | 99.7183 | 4 | 14 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 31.8584 | 22.2222 | 56.2500 | 98.1672 | 10 | 35 | 9 | 7 | 4 | 57.1429 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l125_m1_e0 | het | 35.0877 | 22.2222 | 83.3333 | 78.0488 | 2 | 7 | 15 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l125_m2_e0 | het | 35.0877 | 22.2222 | 83.3333 | 81.0526 | 2 | 7 | 15 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l125_m2_e1 | het | 35.0877 | 22.2222 | 83.3333 | 81.2500 | 2 | 7 | 15 | 3 | 2 | 66.6667 | |
| gduggal-snapplat | INDEL | * | map_l150_m0_e0 | hetalt | 30.7692 | 22.2222 | 50.0000 | 99.5050 | 2 | 7 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_siren | homalt | 34.4828 | 22.2222 | 76.9231 | 89.1667 | 20 | 70 | 20 | 6 | 2 | 33.3333 | |
| mlin-fermikit | INDEL | * | map_l150_m0_e0 | hetalt | 33.3333 | 22.2222 | 66.6667 | 92.5000 | 2 | 7 | 2 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | C1_5 | * | het | 22.2222 | 100.0000 | 2 | 7 | 0 | 0 | 0 | ||||
| jmaeng-gatk | SNP | tv | map_l125_m0_e0 | hetalt | 36.3636 | 22.2222 | 100.0000 | 98.3051 | 2 | 7 | 2 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 36.3636 | 22.2222 | 100.0000 | 98.2456 | 6 | 21 | 1 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | map_l125_m0_e0 | hetalt | 36.3636 | 22.2222 | 100.0000 | 98.3051 | 2 | 7 | 2 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 22.2222 | 0.0000 | 0.0000 | 2 | 7 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I1_5 | map_l250_m0_e0 | homalt | 28.5714 | 22.2222 | 40.0000 | 97.6526 | 2 | 7 | 2 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m0_e0 | het | 36.3636 | 22.2222 | 100.0000 | 97.4026 | 2 | 7 | 2 | 0 | 0 | ||
| ckim-gatk | SNP | * | map_l125_m0_e0 | hetalt | 36.3636 | 22.2222 | 100.0000 | 97.9167 | 2 | 7 | 2 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l125_m0_e0 | hetalt | 36.3636 | 22.2222 | 100.0000 | 97.9167 | 2 | 7 | 2 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 0.0000 | 22.2222 | 0.0000 | 0.0000 | 2 | 7 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 36.3636 | 22.2222 | 100.0000 | 95.3488 | 6 | 21 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m1_e0 | het | 34.9515 | 22.2222 | 81.8182 | 64.5161 | 4 | 14 | 9 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m2_e0 | het | 34.9515 | 22.2222 | 81.8182 | 68.5714 | 4 | 14 | 9 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m2_e1 | het | 34.9515 | 22.2222 | 81.8182 | 68.5714 | 4 | 14 | 9 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 33.4975 | 22.2222 | 68.0000 | 60.3175 | 6 | 21 | 17 | 8 | 6 | 75.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 36.3636 | 22.2222 | 100.0000 | 90.0000 | 4 | 14 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l100_m1_e0 | het | 36.3636 | 22.2222 | 100.0000 | 80.0000 | 4 | 14 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l100_m2_e0 | het | 36.3636 | 22.2222 | 100.0000 | 81.8182 | 4 | 14 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l100_m2_e1 | het | 36.3636 | 22.2222 | 100.0000 | 82.6087 | 4 | 14 | 4 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 35.8293 | 22.1968 | 92.8622 | 57.9026 | 1261 | 4420 | 1301 | 100 | 93 | 93.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 34.9312 | 22.1925 | 82.0000 | 62.4060 | 83 | 291 | 41 | 9 | 9 | 100.0000 | |
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 22.1529 | 0.0000 | 0.0000 | 142 | 499 | 0 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | map_l125_m0_e0 | * | 36.2073 | 22.1125 | 99.8585 | 94.7728 | 2822 | 9940 | 2822 | 4 | 4 | 100.0000 | |
| ckim-vqsr | SNP | tv | map_l150_m1_e0 | homalt | 36.1636 | 22.0730 | 100.0000 | 91.3831 | 871 | 3075 | 871 | 0 | 0 | ||
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 26.7404 | 22.0721 | 33.9130 | 42.0655 | 49 | 173 | 78 | 152 | 131 | 86.1842 | |
| anovak-vg | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 0.0000 | 22.0588 | 0.0000 | 0.0000 | 15 | 53 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 22.0588 | 0.0000 | 0.0000 | 15 | 53 | 0 | 0 | 0 | ||
| ckim-vqsr | SNP | * | map_l125_m0_e0 | homalt | 36.1328 | 22.0501 | 100.0000 | 90.6459 | 1480 | 5232 | 1480 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 31.7845 | 22.0149 | 57.1429 | 50.2269 | 118 | 418 | 188 | 141 | 135 | 95.7447 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 27.2634 | 21.9826 | 35.8835 | 56.2500 | 530 | 1881 | 530 | 947 | 929 | 98.0993 | |
| ckim-vqsr | SNP | ti | map_l250_m2_e1 | homalt | 36.0019 | 21.9526 | 100.0000 | 96.7910 | 389 | 1383 | 389 | 0 | 0 | ||
| ckim-vqsr | SNP | * | map_l250_m0_e0 | homalt | 35.9844 | 21.9396 | 100.0000 | 98.1124 | 138 | 491 | 138 | 0 | 0 | ||
| anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 29.0406 | 21.9331 | 42.9630 | 60.8128 | 59 | 210 | 116 | 154 | 129 | 83.7662 | |
| anovak-vg | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 0.0000 | 21.9178 | 0.0000 | 0.0000 | 16 | 57 | 0 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 35.9551 | 21.9178 | 100.0000 | 84.8780 | 16 | 57 | 31 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 33.5518 | 21.9101 | 71.5909 | 58.0952 | 39 | 139 | 63 | 25 | 25 | 100.0000 | |
| ckim-vqsr | SNP | ti | map_l250_m2_e0 | homalt | 35.8517 | 21.8411 | 100.0000 | 96.8007 | 382 | 1367 | 382 | 0 | 0 | ||