PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51951-52000 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | D16_PLUS | tech_badpromoters | het | 40.0000 | 25.0000 | 100.0000 | 0.0000 | 1 | 3 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 0.0000 | 25.0000 | 0.0000 | 0.0000 | 2 | 6 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 0.0000 | 25.0000 | 0.0000 | 0.0000 | 2 | 6 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | map_l150_m0_e0 | * | 33.3333 | 25.0000 | 50.0000 | 77.7778 | 1 | 3 | 1 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | segdup | hetalt | 0.0000 | 25.0000 | 0.0000 | 0.0000 | 1 | 3 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | tech_badpromoters | * | 33.3333 | 25.0000 | 50.0000 | 0.0000 | 1 | 3 | 1 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | SNP | tv | map_l150_m1_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 94.6237 | 5 | 15 | 5 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_l150_m2_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 95.6140 | 5 | 15 | 5 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_l150_m2_e1 | hetalt | 40.0000 | 25.0000 | 100.0000 | 95.6140 | 5 | 15 | 5 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | map_l150_m1_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 94.6237 | 5 | 15 | 5 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | map_l150_m2_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 95.6140 | 5 | 15 | 5 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | map_l150_m2_e1 | hetalt | 40.0000 | 25.0000 | 100.0000 | 95.6140 | 5 | 15 | 5 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | map_l125_m1_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 90.3226 | 6 | 18 | 6 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | map_l125_m2_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 92.5926 | 6 | 18 | 6 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | map_l125_m2_e1 | hetalt | 40.0000 | 25.0000 | 100.0000 | 92.5926 | 6 | 18 | 6 | 0 | 0 | ||
| anovak-vg | INDEL | I1_5 | tech_badpromoters | het | 37.5000 | 25.0000 | 75.0000 | 69.2308 | 2 | 6 | 3 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | I6_15 | func_cds | hetalt | 0.0000 | 25.0000 | 0.0000 | 0.0000 | 1 | 3 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 26.2295 | 25.0000 | 27.5862 | 55.3846 | 6 | 18 | 8 | 21 | 14 | 66.6667 | |
| anovak-vg | INDEL | I6_15 | map_l250_m1_e0 | het | 30.7692 | 25.0000 | 40.0000 | 96.1538 | 1 | 3 | 2 | 3 | 1 | 33.3333 | |
| anovak-vg | SNP | * | map_l150_m1_e0 | hetalt | 0.0000 | 25.0000 | 0.0000 | 0.0000 | 5 | 15 | 0 | 0 | 0 | ||
| anovak-vg | SNP | * | map_l150_m2_e0 | hetalt | 0.0000 | 25.0000 | 0.0000 | 0.0000 | 5 | 15 | 0 | 0 | 0 | ||
| anovak-vg | SNP | * | map_l150_m2_e1 | hetalt | 0.0000 | 25.0000 | 0.0000 | 0.0000 | 5 | 15 | 0 | 0 | 0 | ||
| anovak-vg | SNP | * | map_l250_m1_e0 | hetalt | 0.0000 | 25.0000 | 0.0000 | 0.0000 | 1 | 3 | 0 | 0 | 0 | ||
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 25.0000 | 0.0000 | 0.0000 | 3 | 9 | 0 | 0 | 0 | ||
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 25.0000 | 0.0000 | 0.0000 | 3 | 9 | 0 | 0 | 0 | ||
| anovak-vg | SNP | ti | map_l250_m1_e0 | hetalt | 0.0000 | 25.0000 | 0.0000 | 0.0000 | 1 | 3 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | map_l150_m1_e0 | hetalt | 0.0000 | 25.0000 | 0.0000 | 0.0000 | 5 | 15 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | map_l150_m2_e0 | hetalt | 0.0000 | 25.0000 | 0.0000 | 0.0000 | 5 | 15 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | map_l150_m2_e1 | hetalt | 0.0000 | 25.0000 | 0.0000 | 0.0000 | 5 | 15 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | map_l250_m1_e0 | hetalt | 0.0000 | 25.0000 | 0.0000 | 0.0000 | 1 | 3 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | map_l250_m0_e0 | het | 33.3333 | 25.0000 | 50.0000 | 99.2509 | 1 | 3 | 2 | 2 | 1 | 50.0000 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 26.6667 | 25.0000 | 28.5714 | 75.0000 | 1 | 3 | 2 | 5 | 3 | 60.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l150_m0_e0 | * | 36.3636 | 25.0000 | 66.6667 | 96.8750 | 2 | 6 | 10 | 5 | 1 | 20.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l150_m0_e0 | het | 36.3636 | 25.0000 | 66.6667 | 97.5936 | 1 | 3 | 6 | 3 | 1 | 33.3333 | |
| qzeng-custom | INDEL | I6_15 | map_l150_m0_e0 | homalt | 36.3636 | 25.0000 | 66.6667 | 92.1053 | 1 | 3 | 4 | 2 | 0 | 0.0000 | |
| qzeng-custom | SNP | * | map_l250_m1_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 99.0991 | 1 | 3 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 33.3333 | 25.0000 | 50.0000 | 93.1034 | 1 | 3 | 1 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 33.3333 | 25.0000 | 50.0000 | 80.0000 | 1 | 3 | 1 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 40.0000 | 25.0000 | 100.0000 | 60.0000 | 3 | 9 | 4 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | map_l150_m0_e0 | * | 33.3333 | 25.0000 | 50.0000 | 93.6508 | 2 | 6 | 2 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l150_m0_e0 | het | 33.3333 | 25.0000 | 50.0000 | 93.5484 | 1 | 3 | 1 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l150_m0_e0 | homalt | 33.3333 | 25.0000 | 50.0000 | 93.1034 | 1 | 3 | 1 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l250_m1_e0 | het | 40.0000 | 25.0000 | 100.0000 | 97.2973 | 1 | 3 | 1 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | map_l125_m1_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 68.4211 | 6 | 18 | 6 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | map_l125_m2_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 77.7778 | 6 | 18 | 6 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | map_l125_m2_e1 | hetalt | 40.0000 | 25.0000 | 100.0000 | 78.5714 | 6 | 18 | 6 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l250_m1_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 98.5294 | 1 | 3 | 1 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l250_m1_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 99.0991 | 1 | 3 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 33.3333 | 25.0000 | 50.0000 | 98.5075 | 1 | 3 | 1 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 33.3333 | 25.0000 | 50.0000 | 98.4000 | 1 | 3 | 1 | 1 | 1 | 100.0000 | |