PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51701-51750 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 5.7762 | 27.5862 | 3.2258 | 99.1721 | 24 | 63 | 29 | 870 | 0 | 0.0000 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 27.5800 | 0.0000 | 0.0000 | 2889 | 7586 | 0 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | map_l125_m2_e1 | homalt | 43.2344 | 27.5790 | 100.0000 | 87.5507 | 3160 | 8298 | 3160 | 0 | 0 | ||
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 27.5552 | 0.0000 | 0.0000 | 3060 | 8045 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 34.1360 | 27.5399 | 44.8870 | 36.7812 | 759 | 1997 | 834 | 1024 | 846 | 82.6172 | |
| anovak-vg | INDEL | * | map_siren | hetalt | 0.0000 | 27.5304 | 0.0000 | 0.0000 | 68 | 179 | 0 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 37.7753 | 27.5229 | 60.2000 | 50.3476 | 120 | 316 | 301 | 199 | 199 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 34.3818 | 27.5134 | 45.8204 | 41.0718 | 1081 | 2848 | 1184 | 1400 | 1153 | 82.3571 | |
| gduggal-bwaplat | SNP | * | map_l250_m0_e0 | homalt | 43.1421 | 27.5040 | 100.0000 | 97.6903 | 173 | 456 | 173 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 36.8196 | 27.4987 | 55.6992 | 44.8224 | 542 | 1429 | 1852 | 1473 | 1170 | 79.4297 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 36.8196 | 27.4987 | 55.6992 | 44.8224 | 542 | 1429 | 1852 | 1473 | 1170 | 79.4297 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 36.6612 | 27.4933 | 55.0021 | 33.8540 | 204 | 538 | 1281 | 1048 | 886 | 84.5420 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 34.4471 | 27.4775 | 46.1538 | 56.0976 | 61 | 161 | 108 | 126 | 89 | 70.6349 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 32.1213 | 27.4648 | 38.6792 | 40.1130 | 39 | 103 | 41 | 65 | 65 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 41.1620 | 27.4615 | 82.1429 | 68.1214 | 410 | 1083 | 414 | 90 | 76 | 84.4444 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 33.6989 | 27.4371 | 43.6639 | 50.1227 | 1669 | 4414 | 2219 | 2863 | 2250 | 78.5889 | |
| eyeh-varpipe | INDEL | I6_15 | * | hetalt | 42.6506 | 27.4354 | 95.7540 | 48.5714 | 2346 | 6205 | 2413 | 107 | 106 | 99.0654 | |
| asubramanian-gatk | SNP | ti | map_l125_m2_e0 | homalt | 43.0457 | 27.4256 | 100.0000 | 87.5971 | 3115 | 8243 | 3115 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | HG002compoundhet | hetalt | 42.7960 | 27.4218 | 97.4089 | 29.0841 | 2341 | 6196 | 2406 | 64 | 63 | 98.4375 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 37.7551 | 27.4074 | 60.6557 | 81.1728 | 37 | 98 | 37 | 24 | 4 | 16.6667 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 42.9825 | 27.3743 | 100.0000 | 60.1626 | 49 | 130 | 49 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | map_l250_m1_e0 | het | 42.7481 | 27.3585 | 97.7136 | 79.5371 | 812 | 2156 | 812 | 19 | 1 | 5.2632 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 42.4269 | 27.3328 | 94.7531 | 66.0231 | 4965 | 13200 | 5219 | 289 | 255 | 88.2353 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 42.4269 | 27.3328 | 94.7531 | 66.0231 | 4965 | 13200 | 5219 | 289 | 255 | 88.2353 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 40.4600 | 27.3210 | 77.9449 | 70.7692 | 309 | 822 | 311 | 88 | 69 | 78.4091 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 39.4737 | 27.2727 | 71.4286 | 84.6715 | 15 | 40 | 15 | 6 | 2 | 33.3333 | |
| gduggal-snapplat | INDEL | D6_15 | map_l250_m2_e0 | * | 42.8571 | 27.2727 | 100.0000 | 99.7487 | 6 | 16 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m2_e1 | * | 42.8571 | 27.2727 | 100.0000 | 99.7537 | 6 | 16 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l100_m1_e0 | homalt | 42.8571 | 27.2727 | 100.0000 | 74.0741 | 9 | 24 | 21 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l100_m2_e0 | homalt | 42.8571 | 27.2727 | 100.0000 | 75.5814 | 9 | 24 | 21 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l100_m2_e1 | homalt | 42.8571 | 27.2727 | 100.0000 | 75.5814 | 9 | 24 | 21 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | map_l125_m0_e0 | hetalt | 40.0000 | 27.2727 | 75.0000 | 94.2857 | 3 | 8 | 3 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m0_e0 | het | 41.8605 | 27.2727 | 90.0000 | 94.5946 | 9 | 24 | 9 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l250_m1_e0 | het | 40.0000 | 27.2727 | 75.0000 | 98.0952 | 3 | 8 | 3 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l250_m2_e0 | * | 41.3793 | 27.2727 | 85.7143 | 97.7346 | 6 | 16 | 6 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l250_m2_e1 | * | 41.3793 | 27.2727 | 85.7143 | 97.7848 | 6 | 16 | 6 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 40.6780 | 27.2727 | 80.0000 | 86.4865 | 3 | 8 | 4 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m1_e0 | * | 41.0959 | 27.2727 | 83.3333 | 80.0000 | 3 | 8 | 5 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m2_e0 | * | 41.3793 | 27.2727 | 85.7143 | 78.7879 | 3 | 8 | 6 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m2_e1 | * | 41.3793 | 27.2727 | 85.7143 | 79.4118 | 3 | 8 | 6 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | map_l150_m1_e0 | * | 42.8571 | 27.2727 | 100.0000 | 88.4615 | 3 | 8 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l150_m2_e0 | * | 42.8571 | 27.2727 | 100.0000 | 89.2857 | 3 | 8 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l150_m2_e1 | * | 42.8571 | 27.2727 | 100.0000 | 89.2857 | 3 | 8 | 3 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 33.7995 | 27.2556 | 44.4783 | 55.2641 | 580 | 1548 | 584 | 729 | 693 | 95.0617 | |
| anovak-vg | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 27.2460 | 0.0000 | 0.0000 | 1856 | 4956 | 0 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_l150_m2_e1 | het | 42.7242 | 27.1911 | 99.6507 | 95.4527 | 1998 | 5350 | 1997 | 7 | 1 | 14.2857 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 27.1889 | 0.0000 | 0.0000 | 59 | 158 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 36.4602 | 27.1762 | 55.3790 | 36.8827 | 256 | 686 | 1359 | 1095 | 912 | 83.2877 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 37.5202 | 27.1605 | 60.6557 | 60.8974 | 22 | 59 | 37 | 24 | 17 | 70.8333 | |
| mlin-fermikit | SNP | * | map_l250_m0_e0 | * | 40.4330 | 27.1194 | 79.4239 | 82.2628 | 579 | 1556 | 579 | 150 | 132 | 88.0000 | |