PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51501-51550 / 86044 show all | |||||||||||||||
| mlin-fermikit | SNP | * | map_l125_m2_e0 | hetalt | 46.1538 | 30.0000 | 100.0000 | 76.3158 | 9 | 21 | 9 | 0 | 0 | ||
| mlin-fermikit | SNP | * | map_l125_m2_e1 | hetalt | 46.1538 | 30.0000 | 100.0000 | 76.9231 | 9 | 21 | 9 | 0 | 0 | ||
| mlin-fermikit | SNP | * | map_l150_m1_e0 | hetalt | 46.1538 | 30.0000 | 100.0000 | 68.4211 | 6 | 14 | 6 | 0 | 0 | ||
| mlin-fermikit | SNP | * | map_l150_m2_e0 | hetalt | 46.1538 | 30.0000 | 100.0000 | 73.9130 | 6 | 14 | 6 | 0 | 0 | ||
| mlin-fermikit | SNP | * | map_l150_m2_e1 | hetalt | 46.1538 | 30.0000 | 100.0000 | 75.0000 | 6 | 14 | 6 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | map_l125_m1_e0 | hetalt | 46.1538 | 30.0000 | 100.0000 | 68.9655 | 9 | 21 | 9 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | map_l125_m2_e0 | hetalt | 46.1538 | 30.0000 | 100.0000 | 76.3158 | 9 | 21 | 9 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | map_l125_m2_e1 | hetalt | 46.1538 | 30.0000 | 100.0000 | 76.9231 | 9 | 21 | 9 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | map_l150_m1_e0 | hetalt | 46.1538 | 30.0000 | 100.0000 | 68.4211 | 6 | 14 | 6 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | map_l150_m2_e0 | hetalt | 46.1538 | 30.0000 | 100.0000 | 73.9130 | 6 | 14 | 6 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | map_l150_m2_e1 | hetalt | 46.1538 | 30.0000 | 100.0000 | 75.0000 | 6 | 14 | 6 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | map_l150_m0_e0 | het | 38.5321 | 30.0000 | 53.8462 | 85.7143 | 6 | 14 | 7 | 6 | 3 | 50.0000 | |
| ndellapenna-hhga | INDEL | C1_5 | * | * | 46.1538 | 30.0000 | 100.0000 | 98.8636 | 3 | 7 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l125_m1_e0 | het | 46.1538 | 30.0000 | 100.0000 | 96.7611 | 9 | 21 | 8 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l125_m2_e0 | het | 46.1538 | 30.0000 | 100.0000 | 97.0803 | 9 | 21 | 8 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l125_m2_e1 | het | 46.1538 | 30.0000 | 100.0000 | 97.1326 | 9 | 21 | 8 | 0 | 0 | ||
| ckim-isaac | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 42.8571 | 30.0000 | 75.0000 | 98.2143 | 3 | 7 | 3 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 44.6809 | 30.0000 | 87.5000 | 57.8947 | 6 | 14 | 7 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l150_m0_e0 | het | 46.1538 | 30.0000 | 100.0000 | 99.1004 | 6 | 14 | 6 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 46.1538 | 30.0000 | 100.0000 | 99.5957 | 3 | 7 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | tech_badpromoters | het | 46.1538 | 30.0000 | 100.0000 | 63.6364 | 3 | 7 | 4 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 29.9578 | 0.0000 | 0.0000 | 71 | 166 | 0 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 40.7379 | 29.8780 | 64.0000 | 63.0542 | 49 | 115 | 48 | 27 | 26 | 96.2963 | |
| gduggal-snapplat | INDEL | D6_15 | map_l100_m2_e1 | homalt | 45.9770 | 29.8507 | 100.0000 | 93.6364 | 20 | 47 | 14 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 43.5741 | 29.8498 | 80.6598 | 59.0401 | 2842 | 6679 | 2836 | 680 | 595 | 87.5000 | |
| anovak-vg | INDEL | * | HG002complexvar | hetalt | 0.0000 | 29.8459 | 0.0000 | 0.0000 | 1104 | 2595 | 0 | 0 | 0 | ||
| anovak-vg | SNP | ti | map_siren | hetalt | 0.0000 | 29.8246 | 0.0000 | 0.0000 | 17 | 40 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 43.8042 | 29.8151 | 82.5243 | 69.3041 | 1709 | 4023 | 1700 | 360 | 316 | 87.7778 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 43.4757 | 29.7973 | 80.3688 | 59.6728 | 2837 | 6684 | 2833 | 692 | 587 | 84.8266 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 45.8495 | 29.7945 | 99.4253 | 32.5581 | 174 | 410 | 173 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 36.4192 | 29.7932 | 46.8354 | 63.9946 | 634 | 1494 | 629 | 714 | 663 | 92.8571 | |
| ciseli-custom | INDEL | I16_PLUS | * | homalt | 37.7444 | 29.7886 | 51.4983 | 66.4182 | 465 | 1096 | 464 | 437 | 402 | 91.9908 | |
| anovak-vg | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 29.7872 | 0.0000 | 0.0000 | 14 | 33 | 0 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 42.3952 | 29.7723 | 73.6000 | 86.9452 | 170 | 401 | 184 | 66 | 26 | 39.3939 | |
| asubramanian-gatk | SNP | * | map_l100_m0_e0 | * | 45.8193 | 29.7342 | 99.8160 | 91.0946 | 9765 | 23076 | 9765 | 18 | 6 | 33.3333 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 36.1644 | 29.7297 | 46.1538 | 94.8310 | 11 | 26 | 12 | 14 | 4 | 28.5714 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 42.5806 | 29.7297 | 75.0000 | 50.4762 | 44 | 104 | 39 | 13 | 10 | 76.9231 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 43.4690 | 29.6943 | 81.0811 | 66.1792 | 204 | 483 | 150 | 35 | 34 | 97.1429 | |
| gduggal-snapvard | INDEL | I6_15 | HG002complexvar | homalt | 45.0525 | 29.6785 | 93.4732 | 26.9165 | 360 | 853 | 401 | 28 | 27 | 96.4286 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 41.7093 | 29.6774 | 70.1493 | 82.9517 | 46 | 109 | 47 | 20 | 19 | 95.0000 | |
| ckim-vqsr | SNP | * | map_l125_m1_e0 | homalt | 45.7370 | 29.6539 | 99.9402 | 85.9137 | 5013 | 11892 | 5013 | 3 | 2 | 66.6667 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 41.4919 | 29.6496 | 69.0852 | 68.2046 | 220 | 522 | 219 | 98 | 82 | 83.6735 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 29.6470 | 0.0000 | 0.0000 | 2024 | 4803 | 0 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 45.2414 | 29.6315 | 95.6081 | 53.7572 | 2388 | 5671 | 2830 | 130 | 123 | 94.6154 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 45.2414 | 29.6315 | 95.6081 | 53.7572 | 2388 | 5671 | 2830 | 130 | 123 | 94.6154 | |
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 44.4444 | 29.6296 | 88.8889 | 99.4278 | 8 | 19 | 8 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 29.6000 | 0.0000 | 0.0000 | 37 | 88 | 0 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l250_m0_e0 | homalt | 45.6637 | 29.5872 | 100.0000 | 97.2939 | 129 | 307 | 129 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 29.5818 | 0.0000 | 0.0000 | 2037 | 4849 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 39.2875 | 29.5634 | 58.5440 | 45.2777 | 1571 | 3743 | 3080 | 2181 | 1823 | 83.5855 | |