PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51051-51100 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 5 | 10 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 5 | 10 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 11 | 22 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | func_cds | * | 44.4444 | 33.3333 | 66.6667 | 50.0000 | 4 | 8 | 4 | 2 | 1 | 50.0000 | |
| anovak-vg | INDEL | I16_PLUS | func_cds | het | 50.0000 | 33.3333 | 100.0000 | 0.0000 | 3 | 6 | 3 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | map_l100_m1_e0 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 1 | 2 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 1 | 2 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | map_l100_m2_e1 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 1 | 2 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 1 | 2 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 33.3333 | 33.3333 | 33.3333 | 79.3103 | 1 | 2 | 2 | 4 | 4 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l125_m2_e0 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 1 | 2 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 30.7692 | 33.3333 | 28.5714 | 81.5789 | 1 | 2 | 2 | 5 | 4 | 80.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l125_m2_e1 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 1 | 2 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 30.7692 | 33.3333 | 28.5714 | 81.5789 | 1 | 2 | 2 | 5 | 4 | 80.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 36.3636 | 33.3333 | 40.0000 | 72.2222 | 1 | 2 | 2 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 33.3333 | 33.3333 | 33.3333 | 76.0000 | 1 | 2 | 2 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 33.3333 | 33.3333 | 33.3333 | 76.0000 | 1 | 2 | 2 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 377 | 754 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 15 | 30 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 1 | 2 | 0 | 0 | 0 | ||
| anovak-vg | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 5 | 10 | 0 | 0 | 0 | ||
| anovak-vg | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 5 | 10 | 0 | 0 | 0 | ||
| anovak-vg | SNP | ti | map_l125_m1_e0 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 8 | 16 | 0 | 0 | 0 | ||
| anovak-vg | SNP | ti | map_l125_m2_e0 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 8 | 16 | 0 | 0 | 0 | ||
| anovak-vg | SNP | ti | map_l125_m2_e1 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 8 | 16 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 5 | 10 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 5 | 10 | 0 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l250_m1_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 98.9130 | 1 | 2 | 1 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l250_m2_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 98.9691 | 1 | 2 | 1 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l250_m2_e1 | homalt | 50.0000 | 33.3333 | 100.0000 | 99.0099 | 1 | 2 | 1 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | map_l100_m2_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 91.3043 | 14 | 28 | 14 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | map_l150_m0_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 98.0000 | 1 | 2 | 1 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | map_l150_m0_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 96.8750 | 1 | 2 | 1 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | map_l150_m1_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 90.7407 | 5 | 10 | 5 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | map_l150_m2_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 92.7536 | 5 | 10 | 5 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | map_l150_m2_e1 | hetalt | 50.0000 | 33.3333 | 100.0000 | 92.7536 | 5 | 10 | 5 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_l100_m2_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 91.2500 | 14 | 28 | 14 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | map_l150_m0_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.0476 | 1 | 2 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I16_PLUS | map_l125_m0_e0 | * | 40.0000 | 33.3333 | 50.0000 | 85.7143 | 2 | 4 | 2 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l125_m0_e0 | het | 42.8571 | 33.3333 | 60.0000 | 96.2963 | 3 | 6 | 3 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l250_m1_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.2963 | 1 | 2 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | map_l250_m2_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.4286 | 1 | 2 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | map_l250_m2_e1 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.5517 | 1 | 2 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | tech_badpromoters | homalt | 50.0000 | 33.3333 | 100.0000 | 66.6667 | 1 | 2 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l100_m1_e0 | hetalt | 33.3333 | 100.0000 | 1 | 2 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 33.3333 | 100.0000 | 1 | 2 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l100_m2_e1 | hetalt | 33.3333 | 100.0000 | 1 | 2 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 33.3333 | 100.0000 | 1 | 2 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l125_m2_e0 | hetalt | 33.3333 | 100.0000 | 1 | 2 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l125_m2_e1 | hetalt | 33.3333 | 100.0000 | 1 | 2 | 0 | 0 | 0 | ||||