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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
50851-50900 / 86044 show all
gduggal-snapvardINDEL*map_l100_m2_e1hetalt
0.0000
34.0909
0.0000
0.0000
4587000
gduggal-snapplatINDELD6_15map_l125_m0_e0*
48.0801
34.0426
81.8182
97.4713
1631920
0.0000
gduggal-snapplatINDELD6_15map_l150_m2_e1het
45.0704
34.0426
66.6667
96.1637
16311051
20.0000
ghariani-varprowlINDELI16_PLUSHG002compoundhethet
4.7472
34.0426
2.5515
55.6957
163126993986
99.2951
ghariani-varprowlINDELI16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10*
39.0244
34.0426
45.7143
78.5276
1631161918
94.7368
eyeh-varpipeINDELD1_5map_l100_m1_e0hetalt
48.9649
34.0426
87.1795
93.5323
16313453
60.0000
ckim-isaacINDELD6_15map_l125_m0_e0*
50.0000
34.0426
94.1176
94.5860
16311611
100.0000
ciseli-customINDELD16_PLUSmap_l100_m2_e1*
43.8881
34.0206
61.8182
89.1304
3364342115
71.4286
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
36.9719
33.9924
40.5239
46.0310
32156243321847234680
99.0896
gduggal-snapvardINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
38.5774
33.9720
44.6273
63.2598
34226651539566944337
64.7894
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
50.2734
33.9647
96.7108
42.6363
1847359121177272
100.0000
gduggal-bwaplatINDEL*map_l250_m0_e0het
50.7042
33.9623
100.0000
99.5919
18351800
mlin-fermikitINDELI1_5map_l250_m1_e0*
49.3151
33.9623
90.0000
92.9701
36703643
75.0000
ckim-isaacINDELI6_15map_l125_m1_e0*
50.7042
33.9623
100.0000
94.6903
18351800
ckim-isaacINDELI6_15map_l125_m2_e0*
50.7042
33.9623
100.0000
95.3368
18351800
ckim-isaacINDELI6_15map_l125_m2_e1*
50.7042
33.9623
100.0000
95.4774
18351800
gduggal-bwaplatSNPtvmap_l250_m2_e1*
50.6394
33.9506
99.5976
97.7410
990192699041
25.0000
gduggal-snapplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
49.0771
33.9479
88.5320
66.3182
5671110345705739624
84.4384
gduggal-snapplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
49.0771
33.9479
88.5320
66.3182
5671110345705739624
84.4384
gduggal-snapplatINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50het
24.5228
33.9401
19.1964
80.6408
5781125602253412
0.4736
mlin-fermikitSNPtimap_l250_m2_e0*
48.4805
33.9257
84.9075
79.7858
169933091699302258
85.4305
ghariani-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
36.5445
33.8941
39.6445
65.7686
10882122109316641651
99.2188
eyeh-varpipeINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
50.3229
33.8852
97.7333
47.5634
1617315525876056
93.3333
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
37.1023
33.8847
40.9951
49.8226
46719114463966776648
99.5657
anovak-vgINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
39.8320
33.8727
48.3358
55.3849
34126661419744863438
76.6384
gduggal-snapplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
26.6667
33.8710
21.9895
96.6397
4282421495
3.3557
gduggal-snapplatINDELD6_15HG002complexvarhetalt
48.9308
33.8598
88.1797
67.9303
3436703735039
78.0000
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
39.0586
33.8542
46.1538
69.3790
130254132154146
94.8052
ciseli-customINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10*
39.3162
33.8235
46.9388
96.7399
2345232620
76.9231
ciseli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
38.9071
33.7695
45.8884
60.0034
10842126107712701203
94.7244
gduggal-snapplatINDELD6_15*het
45.6195
33.7388
70.4153
67.7429
3911768130181268180
14.1956
ckim-isaacINDELI6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
50.4505
33.7349
100.0000
36.5385
28553300
mlin-fermikitINDELI16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
49.2700
33.7209
91.4286
84.0909
29573232
66.6667
gduggal-snapplatINDELD6_15HG002compoundhet*
47.6068
33.6951
81.0840
49.2004
304359882962691439
63.5311
gduggal-snapvardINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200*
35.5104
33.6851
37.5449
56.5557
4158176271043747
71.6203
gduggal-bwaplatSNPtvmap_l250_m2_e0*
50.3112
33.6572
99.5893
97.7433
970191297041
25.0000
ciseli-customINDELI1_5map_l100_m0_e0homalt
48.0468
33.6538
83.9506
85.2727
70138681310
76.9231
mlin-fermikitSNPtimap_l150_m0_e0*
48.0167
33.6471
83.8086
63.2254
264552162645511462
90.4110
ciseli-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
46.1817
33.6158
73.7500
67.0103
1192351184240
95.2381
asubramanian-gatkSNPtimap_l125_m1_e0het
50.2744
33.6034
99.7724
92.0217
6138121286136145
35.7143
mlin-fermikitSNP*map_l150_m0_e0*
47.5288
33.5688
81.3658
64.0159
403979934039925818
88.4324
gduggal-bwaplatSNP*lowcmp_SimpleRepeat_quadTR_51to200*
49.0051
33.5664
90.7407
98.6432
48954953
60.0000
anovak-vgINDELI1_5HG002compoundhet*
40.3635
33.5626
50.6211
62.9728
41478209562454864446
81.0427
ciseli-customINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200het
44.1767
33.5366
64.7059
59.2000
55109663629
80.5556
gduggal-snapplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
41.5098
33.5081
54.5317
83.3700
121424091444120429
2.4086
asubramanian-gatkSNPtvmap_l125_m2_e1het
50.1525
33.4976
99.7460
93.1412
35357018353492
22.2222
mlin-fermikitSNP*map_l250_m2_e1*
47.5699
33.4544
82.2913
80.2109
267253152672575501
87.1304
gduggal-bwavardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
44.8658
33.4523
68.1013
69.9638
28135596276912971197
92.2899
gduggal-snapvardINDELD6_15HG002complexvarhomalt
48.4509
33.4474
87.8641
42.5384
3917783625046
92.0000
mlin-fermikitINDELD1_5lowcmp_SimpleRepeat_diTR_51to200*
41.4591
33.4290
54.5667
44.1830
233464233194191
98.4536